Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq963 138 1e-27 seq1059 120 4e-22 >seq963 Length=27641 Score = 138 bits (152), Expect = 1e-27 Identities = 303/447 (68%), Gaps = 8/447 (2%) Strand=Plus/Plus Query 36158 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 36217 || || || |||||||| ||||||||||||| ||| | || ||| ||||||||| Sbjct 17247 CACGCAAAGTCGCAGTGCAGACCCTCGTCTCGCGAAATCAGCTCATTGCTGAACGTGAGT 17306 Query 36218 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAA 36276 || ||||| || || ||||| || |||||||| || | |||| || || || || || || Sbjct 17307 CCAGGCATGAGCCCGCGCTTCTTGAGCCAAAAGATTG-CGCAGAAAGAGCCGGAGAAAAA 17365 Query 36277 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATG-TA 36335 ||||||||| ||||| ||||| || | || | |||| || | || || ||| | Sbjct 17366 AATTCCTTCGACTGCGGCAAACGCGACCAGACGCTCTGCAAAGGATGC-GTGCGATGAGA 17424 Query 36336 TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAA 36395 ||||| | |||||| |||||||| || || || || || || || ||||| | | Sbjct 17425 TCCACGTCAAAGCCCACTCGGCCTTTTTCTTCACGCAGGGAATCTCTTCCATAGCGTGGA 17484 Query 36396 AGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCA--AAAGACTATACAT 36453 |||||| ||| ||||| | || || || || ||||| | || || ||| | Sbjct 17485 AGAGATGGTTCTTTTCCTCTGGGTCGGACACGTACGTGTCAATGAGCAAGGA--GTACGT 17542 Query 36454 TTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 36513 |||||| || ||||| || || || || || || || || || || | || || | || Sbjct 17543 TTCCGAGTGGATGTTCTCCATCGCGATCTGGAAGCCATAAAAGCAGCGCGCTTCCGGGAT 17602 Query 36514 CTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGC 36573 ||| || || | | || || || ||||| || || |||||||| || || Sbjct 17603 CTGGACGTCCTTCGAGAAGCGCTCGCACAAATTCTCCAGAACGATTCCGTCCGATGCGGC 17662 Query 36574 AAAAAACGCCAATACATGTTTTATAAA 36600 || || || | ||||| || || || Sbjct 17663 GAAGAAGGCGAGCACATGCTTGATGAA 17689 >seq1059 Length=17963 Score = 120 bits (132), Expect = 4e-22 Identities = 420/648 (65%), Gaps = 12/648 (2%) Strand=Plus/Plus Query 66041 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 66100 ||||| |||||| |||| |||||| ||||| || || || || |||| || || ||| Sbjct 16156 CCACTGTCCGTCCTCCTCCACTCGCTTCATGAACAGGTCCGGCGTCCACAGCGCGTAAAA 16215 Query 66101 TAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 66160 | ||| | | | || || || || ||||| || ||||||||| | | Sbjct 16216 GAGATCACGCGCACGTGACTCTTCCTTGCCGTGGTTCTTGCGCAGGTCGAGGAACTCAAA 16275 Query 66161 AATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 66220 ||| || |||||||| || | ||| ||| | | || || || || || Sbjct 16276 AATGTCGGCGTGCCACGGCTCAATGTAGCAGGCAAACGCACCTTTGCGCTTACCACCGCC 16335 Query 66221 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 66280 |||||| | ||| | || |||| ||| || |||| || |||||| | ||| || || || Sbjct 16336 CTGATCCACGTAACGCGCTGTGTCATTGTACACTCGCAGCATTGGTACAATGCCGTTTGA 16395 Query 66281 TGTACCATTGGT-CCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGATAGAC 66339 | ||||| || ||| || || ||||| | ||||| || || ||| || |||| Sbjct 16396 CGAGCCATTTGTGCCCCGA-ATGTAGCTCTTGGTGGCACGGATGTTCGAAATGGAGAGAC 16454 Query 66340 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCT 66399 | || || || || || || || | ||||| || || | ||||||||||||||| | Sbjct 16455 CGATGCCGCCGGCTGACTTGGAAATCACCGCGCAGCGCTTCAGCGTATCATAGATGCCTT 16514 Query 66400 CTATACTATCATCCATCATGTTAAGTAGAAAAC---AGCTAGACATTTGGTGACGACTAG 66456 | || || || ||||| | || ||||| | |||| || | || || | | Sbjct 16515 CGATCGAGTCTTCTTTCATGGTCAGCAGAAAGCACGAGCT-GAGCTGCGGGCGCGGC--G 16571 Query 66457 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGT 66516 | | ||||| || || || || || || ||||| || | |||| || | | | || Sbjct 16572 TGCTTGCATTGAACAAAGTCGGCGAGGCATGCGTGAAGAACTTTTGCGACAACATTTCGT 16631 Query 66517 ACGTCTCAATA--GCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 66574 ||||||| | | ||| | | | ||| || || |||||||| || ||||| | Sbjct 16632 ACGTCTCGAGAACGCTCGGGATGTCGTGCAT--GTGGATGCCTACTGCCACGCGCATCAG 16689 Query 66575 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 66634 ||||||||| |||| || || | || ||| || ||| | ||| || ||| | Sbjct 16690 CATGTGCTGCGGTCGCTCCACCACCTGTCCGTTCATGCGCAAAAGGTACGAACGTTCGAG 16749 Query 66635 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 66682 || || || ||||| |||| ||| | || || || |||||||| || Sbjct 16750 CGTCTTGAACCCAAAGTAGTCGTAGCAGAAATCGCGGTCGTAAATGAT 16797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658148003339760