Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq148 181 9e-41 >seq148 Length=44851 Score = 181 bits (200), Expect = 9e-41 Identities = 409/607 (67%), Gaps = 17/607 (3%) Strand=Plus/Plus Query 20912 CAGCTGAAGCAGCAGGGGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTG 20971 |||||| ||| || | ||| | |||||||||||| ||||| ||||| ||||| || Sbjct 22158 CAGCTGCTGCAAAAGCGCATCGATGTGGTTGTTGTACACGTGCGCGTCGCCCAACACATG 22217 Query 20972 CACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGCGATCA-GATACGTCAGGAGGGCGT 21030 |||||| |||||||| ||||| | || || | || ||| ||||| || || | Sbjct 22218 CACAAACTCTCCCGGTTGAAGGCCGACAATATGCGCCACCATGAT-GGTCAGCAGCGCAT 22276 Query 21031 AGCTGGCGATGTTAAACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGC 21090 ||||||| ||||| || || || || | ||||||||| || | |||||||| ||||| Sbjct 22277 AGCTGGCAATGTTGAAAGGCACACCCAAACCCATGTCGCAAGAGCGCTGGTACATCTGGC 22336 Query 21091 AGGACAGCTCCCCCCGAGC---CACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAG 21147 | |||||||| || | || ||||||||| || || | ||| || || || | | Sbjct 22337 ACGACAGCTCGCCGCTGGCATTCACGTAAAATTGGGCGAACATGTGGCACGGTGGCAAGG 22396 Query 21148 CCATCCGCGCGAGGTCCGCGGGGTTCCACGCGCACATAACGATGCGCCGATCGTGGGGCC 21207 |||| ||| || | || || |||||||| | ||| || ||||| || || | || Sbjct 22397 CCATTTGCGATAGCGCGGCCGGATTCCACGCACTCATGACCATGCGGCGGTCATTCGGGT 22456 Query 21208 GCCTGTTAATTAGATCCACCACGTAACGCAGCTGGTCCACCCCCTGACCCTCGTAGTTGG 21267 || | ||| | ||| ||||||| ||||| || || || |||||| || Sbjct 22457 TTGTGCGCAGCGTATCAATCACACCCTGCAGCTGATCCACGCCTTGCCCGGCGTAGTCGG 22516 Query 21268 CGTCGGCCCCCCTGTACTCCGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCA 21327 ||| | ||| || ||||| || | |||||| || || || ||||| |||| Sbjct 22517 CGTGCTTGTTCGAGTATGTTGCGCCAAAGTGGCGCCACTGAAAGCCATAGACCGGACCCA 22576 Query 21328 GATCGCC---CTCGCG-GCGGTCCCCGAAGCCCTGCGCC--GCCAAAAAGGCGCGGGACC 21381 | ||||| ||| || | ||| || || | | | ||| ||| |||| || | Sbjct 22577 GGTCGCCCGGCTCACGCTCAGTC-----AGACC-GAGACTATCCAGAAACTCGCGCGAGC 22630 Query 21382 CGTGCGCGTCCCAAATTTTTACGCCGCGGCGCGACAGTTCGGTGGAGTCGGTGGAGCCCC 21441 ||| | |||||||||| | | ||||| || ||| | ||| ||| ||| ||| | Sbjct 22631 CGTTCCCGTCCCAAATGTGGATACCGCGTGCCGCGAGTAGGTTGGCGTCCGTGCTGCCGC 22690 Query 21442 TGATAAACCACAGCAACTCCTCCACGACGCCCCTCCAAAACACCCTTTTGGTGGTTAACA 21501 | ||||||||||| |||||| ||||||| | ||| ||||| | || ||||| | || Sbjct 22691 GCACAAACCACAGCATTTCCTCCGCGACGCCGCGCCAGAACACGCGCTTTGTGGTGAGCA 22750 Query 21502 GAGGAAA 21508 | || || Sbjct 22751 GCGGGAA 22757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427760286450720