Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq2120 87.8 1e-12 >seq2120 Length=9606 Score = 87.8 bits (96), Expect = 1e-12 Identities = 106/142 (75%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 33580 GGCGACAAGTTTGCATCGTTC-ACGGCCCAGAAGGGCACGTGCGGCATGATGTACGACCA 33638 |||||||| ||||| ||| | |||| | |||| ||||||||||| || |||||| || Sbjct 3441 GGCGACAAATTTGCCTCGCGCCACGGAC-AGAAAGGCACGTGCGGGATTATGTACCGGCA 3499 Query 33639 GTGGGACATGCCGTTCACGGCCGACGGCGTGGTCCCGGACCTAGTCATCAACCCGCATGC 33698 | || | || |||||||| ||||||||||| || || | | | |||||||| || Sbjct 3500 GGAAGATTTACCTTTCACGGCTGACGGCGTGGTACCAGATATCATTGTGAACCCGCACGC 3559 Query 33699 GTTCCCCTCGCGCATGACGGTA 33720 | |||| || || ||||| ||| Sbjct 3560 GATCCCGTCCCGTATGACTGTA 3581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356220514426642