Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq963 107 2e-18 >seq963 Length=27641 Score = 107 bits (118), Expect = 2e-18 Identities = 362/544 (67%), Gaps = 26/544 (5%) Strand=Plus/Minus Query 52532 TCAACGCTTTTGACAATGTTCCGTGTGTGCGCAAAAAGGATGATTGGGCATTGAAATGGA 52591 || ||||| | || | |||| || ||| ||||||| || ||||| |||| |||| Sbjct 17484 TCCACGCTATGGAAGAGATTCCCTGCGTGAAGAAAAAGGCCGAGTGGGCTTTGACGTGGA 17425 Query 52592 TCGAAAACGACAAAGCCACTTTTGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAGGTG 52651 || | || | || ||||| || ||||||||||||||||| ||| ||||| Sbjct 17424 TCTCATCGCACGCATCC---TTTGCAGAGCGTCTGGTCGCGTTTGCCGCAGTCGAAGGAA 17368 Query 52652 TGttttt-ttCGGGTAGTTTTGCGGCAATATTTTACATCAA-AACCTTGGGCATAATGCC 52709 | ||||| | ||| | || ||| ||||| |||| |||| || | |||| | ||||| Sbjct 17367 TTTTTTTCTCCGGCTCTTTCTGC-GCAATCTTTTGGCTCAAGAAGCGCGGGC-TCATGCC 17310 Query 52710 CGGCCTCACGTTTAGCAACGAGTTGATATCGCGCGACGAAGGAATGCACACAGATTTTGC 52769 || |||||||| ||||| ||| |||| ||||| ||||| || ||||| || ||||| Sbjct 17309 TGGACTCACGTTCAGCAATGAGCTGATTTCGCGAGACGAGGGTCTGCACTGCGACTTTGC 17250 Query 52770 GTGTTTGTATTATA--ATACGCGCGTTAAAGAAAAATTGTCATATGAAAAAATTCTAGAC 52827 ||| | | || | || || || | || || | | |||| | || || Sbjct 17249 GTGCCTCTTGTACAGCATGTGCCCG-----CAGAAGCTGCCGAACGAAACGGTGCTCAAC 17195 Query 52828 ATGTTTAAAGAG-GCCGTCGACATTGAAAAAGAGTTTTTTACGGACGCTTTACCCGTATC 52886 || | | ||| || || | || || || ||| ||| ||||| | |||| Sbjct 17194 AT-CATCACGAGCGCTGTTGCGTGCGAGAAGGAATTTATTATTGACGCGCT-GCCGTGCG 17137 Query 52887 A-TTGTTGGGCATGAAC-GCGACCATGATGTGCG-AGTACATCGAGTTTGTTGCGGACAG 52943 | ||| | || |||||| |||| | | ||| ||| | || || |||||||| || ||| | Sbjct 17136 ACTTGATCGGGATGAACAGCGAAC-TTATG-GCGCAATATATTGAGTTTGTCGCCGACCG 17079 Query 52944 ACTGTTGATGCAGCTCGGTCAGCCGAAATACTATA--ATGCGCGTAACCCCTTTTCGTTT 53001 ||| | | ||||| || ||||| | | || | || || ||||| ||| | Sbjct 17078 CCTGCTCCAGTCCCTCGGGCA--CGAAAAAGTTTACCACGCCCGCAACCCGTTTGACTGG 17021 Query 53002 ATGAACAACATATCGCTCGAGGGCAAAACAAACTTTTTCGAGAGACGTGTGGGCGAGTAC 53061 ||| | || |||||||| || || || |||||||| |||| |||||||| |||||| Sbjct 17020 ATGGAGCTGATTTCGCTCGAAGGGAAGACCAACTTTTTTGAGAAGCGTGTGGGAGAGTAC 16961 Query 53062 AAAA 53065 ||| Sbjct 16960 CAAA 16957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496045310788800