Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq963 161 1e-34 seq1059 120 4e-22 >seq963 Length=27641 Score = 161 bits (178), Expect = 1e-34 Identities = 310/450 (69%), Gaps = 8/450 (2%) Strand=Plus/Plus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || || || |||||||||||||||||||||| ||| || || ||| ||||||||| Sbjct 17247 CACGCAAAGTCGCAGTGCAGACCCTCGTCTCGCGAAATCAGCTCATTGCTGAACGTGAGT 17306 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAA 50078 || ||||| || || ||||| || |||||||| || | |||| || || || || || || Sbjct 17307 CCAGGCATGAGCCCGCGCTTCTTGAGCCAAAAGATTG-CGCAGAAAGAGCCGGAGAAAAA 17365 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCATG-TA 50137 |||||||| ||||||||||| || || || | |||| || | ||| || ||| | Sbjct 17366 AATTCCTTCGACTGCGGCAAACGCGACCAGACGCTCTGCAAAGGATGCG-TGCGATGAGA 17424 Query 50138 TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAA 50197 ||||| | |||||| |||||||| || || || || || ||| ||| || || | | Sbjct 17425 TCCACGTCAAAGCCCACTCGGCCTTTTTCTTCACGCAGGGAATCTCTTCCATAGCGTGGA 17484 Query 50198 AGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCA--AAAGACTATACAT 50255 |||||| ||| ||||| | || || || || || || | || || ||| | Sbjct 17485 AGAGATGGTTCTTTTCCTCTGGGTCGGACACGTACGTGTCAATGAGCAAGGA--GTACGT 17542 Query 50256 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 50315 |||||| || ||||| || || || ||||| || || || || || | || || | || Sbjct 17543 TTCCGAGTGGATGTTCTCCATCGCGATCTGGAAGCCATAAAAGCAGCGCGCTTCCGGGAT 17602 Query 50316 CTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGC 50375 ||| || || | | || || || ||||| || || |||||||| || || Sbjct 17603 CTGGACGTCCTTCGAGAAGCGCTCGCACAAATTCTCCAGAACGATTCCGTCCGATGCGGC 17662 Query 50376 AAAAAACGCCAATACATGTTTTATAAAATG 50405 || || || | ||||| || || || || Sbjct 17663 GAAGAAGGCGAGCACATGCTTGATGAAGTG 17692 >seq1059 Length=17963 Score = 120 bits (132), Expect = 4e-22 Identities = 420/648 (65%), Gaps = 12/648 (2%) Strand=Plus/Plus Query 79920 CCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 79979 ||||| ||| || |||| ||||| ||||| || || || || |||| || || ||| Sbjct 16156 CCACTGTCCGTCCTCCTCCACTCGCTTCATGAACAGGTCCGGCGTCCACAGCGCGTAAAA 16215 Query 79980 TAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 80039 ||||| | | | ||| || || || ||||| || ||||||||| | | Sbjct 16216 GAGATCACGCGCACGTGACTCTTCCTTGCCGTGGTTCTTGCGCAGGTCGAGGAACTCAAA 16275 Query 80040 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCC 80099 ||| || | |||||||| || | ||| ||| | | || || || || || Sbjct 16276 AATGTCGGCGTGCCACGGCTCAATGTAGCAGGCAAACGCACCTTTGCGCTTACCACCGCC 16335 Query 80100 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 80159 |||||| | ||| | || |||| ||| || |||| || |||||| | ||| || || || Sbjct 16336 CTGATCCACGTAACGCGCTGTGTCATTGTACACTCGCAGCATTGGTACAATGCCGTTTGA 16395 Query 80160 TGTACCATTGGT-CCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGAC 80218 | ||||| || ||| || || ||||| ||||||| || || ||| || |||| Sbjct 16396 CGAGCCATTTGTGCCCCGA-ATGTAGCTCTTGGTGGCACGGATGTTCGAAATGGAGAGAC 16454 Query 80219 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCT 80278 | || || || || || || || | ||||| || || | ||||||||||||||| | Sbjct 16455 CGATGCCGCCGGCTGACTTGGAAATCACCGCGCAGCGCTTCAGCGTATCATAGATGCCTT 16514 Query 80279 CTATGCTATCATCAATCATGTTAAGTAGAAAAC---AGCTAGACATTTGGTGACGACTAG 80335 | || || || ||||| | || ||||| | |||| || | || || | | Sbjct 16515 CGATCGAGTCTTCTTTCATGGTCAGCAGAAAGCACGAGCT-GAGCTGCGGGCGCGGC--G 16571 Query 80336 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGT 80395 | | ||||| || || || || || || ||||| || | |||| |||| | | || Sbjct 16572 TGCTTGCATTGAACAAAGTCGGCGAGGCATGCGTGAAGAACTTTTGCGACAACATTTCGT 16631 Query 80396 ACGTCTCAATA--GCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAA 80453 ||||||| | | ||| | | ||| || || ||||| || || ||||| | Sbjct 16632 ACGTCTCGAGAACGCTCGGGATGTCGTGCAT--GTGGATGCCTACTGCCACGCGCATCAG 16689 Query 80454 CATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAA 80513 ||||||||| |||| || || | || || || ||| | ||| || ||| | Sbjct 16690 CATGTGCTGCGGTCGCTCCACCACCTGTCCGTTCATGCGCAAAAGGTACGAACGTTCGAG 16749 Query 80514 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561 || || || ||||| |||| ||| | || || || |||||||| || Sbjct 16750 CGTCTTGAACCCAAAGTAGTCGTAGCAGAAATCGCGGTCGTAAATGAT 16797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718241739222960