Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq963 129 8e-25 seq1059 120 4e-22 >seq963 Length=27641 Score = 129 bits (142), Expect = 8e-25 Identities = 240/345 (70%), Gaps = 8/345 (2%) Strand=Plus/Plus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || || || ||||||||||||||||| |||| ||| | || ||| ||||||||| Sbjct 17247 CACGCAAAGTCGCAGTGCAGACCCTCGTCTCGCGAAATCAGCTCATTGCTGAACGTGAGT 17306 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCAGAAAAGAA 42183 || ||||| || || ||||| || |||||||| || | |||| || || || || || || Sbjct 17307 CCAGGCATGAGCCCGCGCTTCTTGAGCCAAAAGATTG-CGCAGAAAGAGCCGGAGAAAAA 17365 Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATG-TA 42242 |||||||| ||||| ||||| || | || | |||| || | || || ||| | Sbjct 17366 AATTCCTTCGACTGCGGCAAACGCGACCAGACGCTCTGCAAAGGATGC-GTGCGATGAGA 17424 Query 42243 TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAA 42302 ||||| | |||||| |||||||| || || || || || ||| ||| || || | | Sbjct 17425 TCCACGTCAAAGCCCACTCGGCCTTTTTCTTCACGCAGGGAATCTCTTCCATAGCGTGGA 17484 Query 42303 AGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCA--AAAGACTATACAT 42360 |||||| ||| ||||| | || || || || || || | || || ||| | Sbjct 17485 AGAGATGGTTCTTTTCCTCTGGGTCGGACACGTACGTGTCAATGAGCAAGGA--GTACGT 17542 Query 42361 TTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACA 42405 ||| || || ||||| || || || ||||| || || || || || Sbjct 17543 TTCCGAGTGGATGTTCTCCATCGCGATCTGGAAGCCATAAAAGCA 17587 >seq1059 Length=17963 Score = 120 bits (132), Expect = 4e-22 Identities = 427/660 (65%), Gaps = 12/660 (2%) Strand=Plus/Plus Query 72003 CCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 72062 ||||| ||| || || | ||||| ||||| || || || || |||| || || ||| Sbjct 16156 CCACTGTCCGTCCTCCTCCACTCGCTTCATGAACAGGTCCGGCGTCCACAGCGCGTAAAA 16215 Query 72063 TAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 72122 ||||| | | | ||| || || || ||||| || ||||||||| | | Sbjct 16216 GAGATCACGCGCACGTGACTCTTCCTTGCCGTGGTTCTTGCGCAGGTCGAGGAACTCAAA 16275 Query 72123 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCC 72182 ||| || | |||||||| || | ||| ||| | | || || || || || Sbjct 16276 AATGTCGGCGTGCCACGGCTCAATGTAGCAGGCAAACGCACCTTTGCGCTTACCACCGCC 16335 Query 72183 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 72242 |||||| | ||| | || |||| ||| || |||| || |||||| | ||| || || || Sbjct 16336 CTGATCCACGTAACGCGCTGTGTCATTGTACACTCGCAGCATTGGTACAATGCCGTTTGA 16395 Query 72243 TGCACCATTGGT-CCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGATAGAC 72301 | ||||| || ||| || || ||||| ||||||| || || ||| || |||| Sbjct 16396 CGAGCCATTTGTGCCCCGA-ATGTAGCTCTTGGTGGCACGGATGTTCGAAATGGAGAGAC 16454 Query 72302 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCT 72361 | || || || || || || || | ||||| || || | ||||||||||||||| | Sbjct 16455 CGATGCCGCCGGCTGACTTGGAAATCACCGCGCAGCGCTTCAGCGTATCATAGATGCCTT 16514 Query 72362 CTATACTATCATCCATCATGTTAAGTAGAAAAC---AGCTAGACATTTGGTGACGACTAG 72418 | || || || ||||| | || ||||| | |||| || | || || | | Sbjct 16515 CGATCGAGTCTTCTTTCATGGTCAGCAGAAAGCACGAGCT-GAGCTGCGGGCGCGGC--G 16571 Query 72419 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGT 72478 | | ||||| || || || || || || ||||| || | |||| |||| | | || Sbjct 16572 TGCTTGCATTGAACAAAGTCGGCGAGGCATGCGTGAAGAACTTTTGCGACAACATTTCGT 16631 Query 72479 ACGTCTCAATAGCTGATTCTATATCCCATTGATGT--ATTCCTACCGCGACACGCATTAA 72536 ||||||| | | | || || | | |||| || ||||| || || ||||| | Sbjct 16632 ACGTCTCGAGAAC--GCTCGGGATGTCGTGCATGTGGATGCCTACTGCCACGCGCATCAG 16689 Query 72537 CATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAA 72596 ||| ||||| |||| || || | || || || ||| | ||| || ||| | Sbjct 16690 CATGTGCTGCGGTCGCTCCACCACCTGTCCGTTCATGCGCAAAAGGTACGAACGTTCGAG 16749 Query 72597 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAG 72656 || || || ||||| |||| ||| | || || || |||||||| || ||| || ||| Sbjct 16750 CGTCTTGAACCCAAAGTAGTCGTAGCAGAAATCGCGGTCGTAAATGATCGCCGCATCGAG 16809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671113914830640