Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq963 87.8 2e-12 >seq963 Length=27641 Score = 87.8 bits (96), Expect = 2e-12 Identities = 171/244 (70%), Gaps = 9/244 (4%) Strand=Plus/Minus Query 50327 TCAACGCTTTCGATAATATTTCGTGTGTGCGTAAAAAGGACGATTGGGCATTGAAATGGA 50386 || ||||| | || | ||| | || ||| ||||||| ||| ||||| |||| |||| Sbjct 17484 TCCACGCTATGGAAGAGATTCCCTGCGTGAAGAAAAAGGCCGAGTGGGCTTTGACGTGGA 17425 Query 50387 -CTaaaaacaaaaaaCTTACTTTGGCCGAACGTTTAGTGGCGTTTGCCATAGTTGAAGGT 50445 || | || | | ||||| | || ||| | || ||||||||| ||| ||||| Sbjct 17424 TCTCATCGCACGCATC---CTTTG-CAGAGCGTCTGGTCGCGTTTGCCGCAGTCGAAGGA 17369 Query 50446 GTGtttttttCCGGTAGCTT-TGCAGCCATATTTTACATTAA-AACCTTAGGCATAATGC 50503 | ||||| ||||| || ||| || || |||| | || || | ||| | |||| Sbjct 17368 ATTTTTTTCTCCGGCTCTTTCTGC-GCAATCTTTTGGCTCAAGAAGCGCGGGC-TCATGC 17311 Query 50504 CCGGCCTCACGTTTAGCAACGAGTTGATTTCGCGCGACGAAGGAATGCACACAGACTTTG 50563 | || |||||||| ||||| ||| |||||||||| ||||| || ||||| ||||||| Sbjct 17310 CTGGACTCACGTTCAGCAATGAGCTGATTTCGCGAGACGAGGGTCTGCACTGCGACTTTG 17251 Query 50564 CGTG 50567 |||| Sbjct 17250 CGTG 17247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506995298232480