Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq963 159 5e-34 seq1059 150 3e-31 seq965 113 7e-20 >seq963 Length=27641 Score = 159 bits (176), Expect = 5e-34 Identities = 391/579 (68%), Gaps = 13/579 (2%) Strand=Plus/Minus Query 124998 TTTCCC-ATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTG 125056 |||||| |||||| | || ||||| ||| |||||||||| ||| |||| ||||| || Sbjct 17819 TTTCCCGATCAGGCACCACGACATCTGGAAAATGTACAAGAAGCACGAGGCGTCCTTCTG 17760 Query 125057 GACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGA 125116 ||| | ||| || |||| ||| | |||| || | ||| || ||| | || Sbjct 17759 GACCGCCGAGGAAATCGACCTGAGCTCGGACTTGCTGCAGTGGC-GA-TCGCTCAACAAG 17702 Query 125117 AACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGT 125176 | ||||| | || || ||| | | |||||||| |||| || || |||||||| Sbjct 17701 GA-TGAGCAGCACTTCATCAAGCATGTGCTCGCCTTCTTCGCCGCATCGGACGGAATCGT 17643 Query 125177 CAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTT 125236 || ||| ||| || ||||| | || | || || || | | ||||| Sbjct 17642 TCTGGAGAATTTGTGCGAGCGCTTCTCGAAGGACGTCCAGATCCCGGAAGCGCGCTGCTT 17583 Query 125237 TTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGA 125296 ||| || ||||| ||| ||| |||||| | |||||||||| |||||| || ||||| Sbjct 17582 TTATGGCTTCCAGATCGCGATGGAGAACATCCACTCGGAAACGTACTCCTTGCTCATTGA 17523 Query 125297 CATGTACATTCGCGATCCGCAACGTAAACA--CATGCTCTTTAACGCAATCGACACGGTG 125354 || |||| | ||| || | | ||| | ||| ||||| |||| || || | | Sbjct 17522 CACGTACGTGTCCGACCCAGAG-GAAAAGAACCAT-CTCTTCCACGCTATGGAAGAGATT 17465 Query 125355 CCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCG 125414 || | | |||||||| | |||| | ||||||| | | || | | || Sbjct 17464 CCCTGCGTGAAGAAAAAGGCCGAGTGGGCTTTGACGTGGATC--TCATCGCACG-CATCC 17408 Query 125415 TACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTT- 125473 | || || | ||||| || || ||||| || || || || || || || || ||| Sbjct 17407 TTTGCAGAGCGTCTGGTCGCGTTTGCCGCAGTCGAAGGAATTTTTTTCTCCGGCTCTTTC 17348 Query 125474 TGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGA 125533 |||| | ||||||||||||||||||||||| |||||||| ||||| ||| ||| || || Sbjct 17347 TGCG-CAATCTTTTGGCTCAAGAAGCGCGGGCTCATGCCTGGACTCACGTTCAGCAATGA 17289 Query 125534 GTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGC 125572 | | || || ||||||||||| || ||||| |||||||| Sbjct 17288 GCTGATTTCGCGAGACGAGGGTCTGCACTGCGACTTTGC 17250 >seq1059 Length=17963 Score = 150 bits (166), Expect = 3e-31 Identities = 353/525 (67%), Gaps = 6/525 (1%) Strand=Plus/Minus Query 96825 GGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGATACGTTACACAGGGCGGC 96884 ||| | || |||||||| || ||||||||| | | || ||||| |||||||| Sbjct 16389 GGCATTGTACCAATGCTGCGAGTGTACAATGACACAGCGCGTTACGTGGATCAGGGCGGT 16330 Query 96885 AATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTTGAC 96944 ||| || ||| || | ||| |||| | || || |||||||| ||| ||||||| Sbjct 16329 GGTAAGCGCAAAGGTGCGTTTGCCTGCTACATTGAGCCGTGGCACGCCGACATTTTTGAG 16270 Query 96945 TTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGACTTGTTTTAT 97004 || |||| ||||||| ||| ||| |||||| |||| || | || | ||||| Sbjct 16269 TTCCTCGACCTGCGCAAGAACCACGGCAAGGAAGAGTCACGTGCGCGTGATCTCTTTTAC 16210 Query 97005 GCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTACTGGAGCCTA 97064 || || ||| ||| || ||||||||||||| || | || | || | |||||||| Sbjct 16209 GCGCTGTGGACGCCGGACCTGTTCATGAAGCGAGTGGAGGAGGACGGACAGTGGAGCCTC 16150 Query 97065 ATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTTGAGGCCAAG 97124 | |||||| || | || || |||| ||| ||||| || || ||||| | Sbjct 16149 TTCTGCCCCAACGAAGCGCCGGGACTGTGCGACACGTGGGGTCCGGACTTCGAGGCGCTG 16090 Query 97125 TACACGGCCTACGAGCAAGAGGGCCG-ATACGTGAGACGAGTCGATGCACGAGAACTGTG 97183 ||||| ||||| | || ||||| || ||||||| || || || ||||||| Sbjct 16089 TACACCAAGTACGAAAACGAAGGCCGCGCGCGCGAGACGATTC-CGGCGCGCAAACTGTG 16031 Query 97184 GAAGGCCAT-CGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAAGGATA 97242 | || | | |||| | ||| | ||||| || || |||||||| || ||||||||| Sbjct 16030 GTTTGCGGTGCTTGAC-TCGCAGATTGAGACCGGCACACCGTACATGCTGTACAAGGATG 15972 Query 97243 CCGTGAATCGCAACAGC-AACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCTGTGC 97301 ||| || | ||| | ||||| | || | ||||| ||| || |||| ||||| Sbjct 15971 CCGCCAA-CTCAAAGTCGAACCAGCAGAACCTCGGCACAATCCGCAGCAGCAATTTGTGC 15913 Query 97302 ACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGC 97346 || ||||| | |||||| | | || |||||| ||| || ||| Sbjct 15912 ACAGAAATCATTGAGTACACAGCACCTGACGAGGTGGCCGTGTGC 15868 >seq965 Length=35529 Score = 113 bits (124), Expect = 7e-20 Identities = 292/443 (66%), Gaps = 14/443 (3%) Strand=Plus/Plus Query 127105 CGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGTCACA 127164 ||||| || || | || | || || || | |||| ||||||||| || || ||||| Sbjct 6061 CGGTAGAAAATCATCGCGCCGCGCGGGCCACGAAGAGCCTTGTGCGTGGTCGTCGTCACC 6120 Query 127165 ATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCCGCAATCAAGCCCGCAATGTGT 127224 | ||| |||||||||||| || || | || | | || | | ||||| |||||| Sbjct 6121 ACGTCCGCATACTCAAAGGGACCGGGCACCACGTCCGCAGCCACAAGGCCCGAAATGTGC 6180 Query 127225 GCAATATCGGCCATCAGCAAGGAGCCGGCTGCATCGGCAATCTCTCGGAATCGTCTATAG 127284 || || ||||| | ||| | | | | | | ||||| ||||| || | ||| ||||| Sbjct 6181 GCCATGTCGGCAAGCAGGTACGCGTCTACCGAGTCGGCGATCTCGCGCATTCGCTTATAG 6240 Query 127285 TCCAAGCGCCGAGGATA-GCAACTGGTGCCGGCTATGATTAGCCTAGGTTTGAATAGATT 127343 || || | || || || || | | || || || || ||| | || ||||| Sbjct 6241 TCGTAGTGGCGCGGGTATGCCGAT-GCACCAGCAATAATGAGCTTGGGCCGGAATAACAG 6299 Query 127344 GGCACTCTCGGCAAGTTTGGCATAGTCGACGAGTCCAGTCTGAGGATCCACCTTGTACGG 127403 || |||| || || ||| ||||||||| || ||| ||||| | || |||||| Sbjct 6300 AGCGTTCTCTGCGAGCTTGTCATAGTCGATGATTCCCGTCTGCTCGTTCAGGCGGTACGG 6359 Query 127404 CATGCTTTCGAAAAAGAGTGATGTAGC--GGACACGTTGC----------GGAATCCGTG 127451 |||| ||| ||||||| || || || |||||| | | ||| ||||| Sbjct 6360 CATGGATTCAAAAAAGATGGACGTTGCCGAGACACGCTTCTTCGGTGTCATGAAGCCGTG 6419 Query 127452 CGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTTTAACGAT 127511 | || || || |||| |||| |||||| ||||||| | | ||||||| || | | Sbjct 6420 AGACAAATGCCCGCCGTGCGGCAAGTCGAGTGCCATGATGCGATCGTGCGGATTGAGAAG 6479 Query 127512 TCCAGTGTACACGGCAAAGTTGG 127534 | ||||||||||| | ||||| Sbjct 6480 CGCGGTGTACACGGCCATGTTGG 6502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741031280594640