Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1200 102 2e-16 seq2751 84.2 5e-11 >seq1200 Length=24482 Score = 102 bits (112), Expect = 2e-16 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || |||||||| || ||||| || || || | ||||| ||||| || || || Sbjct 18699 GTGGACTCCTTCTGAATGTTGTAGTCCGAGAGCGTGCGCCCGTCCTCTAGCTGCTTCCCC 18758 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || | | ||| ||||| || || || || || || ||||||||||| || || Sbjct 18759 GCGAAGATCAAGCGCTGCTGATCTGGCGGGATGCCCTCCTTGTCCTGAATCTTCGCCTTG 18818 Query 104483 ACATTTTCTACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | || || | ||| || ||||| || || || ||||| || || || || Sbjct 18819 ACGTTGTCGATCGTGTC-CGAGGACTCCACCTCGAGCGTGATCGTCTTGCCCGTCAGCGT 18877 Query 104542 TTTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 18878 CTTCACAAAGATCTGCAT 18895 >seq2751 Length=18403 Score = 84.2 bits (92), Expect = 5e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 104414 TGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATC 104473 || ||||| || ||||| || | ||| || || || || || || || || ||||||||| Sbjct 18402 TGCTTTCCGGCGAAAATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGAATC 18343 Query 104474 TTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCA 104533 || || || ||||| || | || ||| | || ||||| || || || ||||| || Sbjct 18342 TTGGCCTTCACATTATCAATCGTGTCGGACGACTCCACCTCGAGCGTGATGGTCTTTCCG 18283 Query 104534 GTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || ||||| |||||||| Sbjct 18282 GTCAGCGTCTTCACAAAAATCTGCAT 18257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151353936591912