Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq148 82.4 5e-11 >seq148 Length=44851 Score = 82.4 bits (90), Expect = 5e-11 Identities = 129/181 (71%), Gaps = 4/181 (2%) Strand=Plus/Plus Query 25445 GTAGACGTGAGCGTCTCCCAGAGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTAACGTA 25504 ||| ||||| ||||| |||| || |||||||||||||||| || ||| || | Sbjct 22191 GTACACGTGCGCGTCGCCCAACACATGCACAAACTCTCCCGGTTGAAGGCCGACAATATG 22250 Query 25505 AGCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCAT 25564 |||| |||| || || || |||||||| ||||| || || || || || ||||| Sbjct 22251 CGCCACCATGATGGTCAGCAGCGCATAGCTGGCAATGTTGAAAGGCACACCCAAACCCAT 22310 Query 25565 GTCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCG-TCGC--TCACGTAAAACT 25621 || | | || | |||||| | ||| ||||| ||||| || | || |||||||||| | Sbjct 22311 GT-CGCAAGAGCGCTGGTACATCTGGCACGACAGCTCGCCGCTGGCATTCACGTAAAATT 22369 Query 25622 G 25622 | Sbjct 22370 G 22370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340125105683022