Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq970 113 4e-20 seq1200 109 5e-19 >seq970 Length=23808 Score = 113 bits (124), Expect = 4e-20 Identities = 157/218 (72%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||||||||||| || || ||||| || | |||||| || | | |||||| | Sbjct 22518 CGCAGAACCAAGTGCAAGGTCGACTCCTTCTGGATGTTATAGTC--TGACAGTGTTCGTC 22575 Query 94853 --TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910 ||||||||||| || || |||| || || | ||||| ||||| || || ||||| | Sbjct 22576 CGTCCTCCAGCTGCTTGCCCGCAAAAATCAAGCGCTGCTGGTCTGGCGGGATGCCTTCCT 22635 Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGA 94970 |||| | ||| || |||||||| ||| ||||| | | ||||| || | ||||| Sbjct 22636 TGTCTTGAATCTTCGCCTTGACATTATCGATGGTGTCCGAGGACTCGACCTCCAACGTGA 22695 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 | || || || || || || || || || ||||||||| Sbjct 22696 TTGTCTTGCCCGTGAGGGTCTTGACGAAAATCTGCATG 22733 >seq1200 Length=24482 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| | || |||| ||||||||| | || || ||||| || | ||| || || Sbjct 18669 CCTCCGCGCAGGCGCAGCACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCCGAG 18728 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| ||||| ||||| || || | ||||| || | ||||||||||| || Sbjct 18729 AGCGTGCGCCCGTCCTCTAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGATCTGGCGGG 18788 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || ||||| | ||| || ||||||||| | ||| ||||| | | || || Sbjct 18789 ATGCCCTCCTTGTCCTGAATCTTCGCCTTGACGTTGTCGATCGTGTCCGAGGACTCCACC 18848 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 || | |||||| || || || || || || |||||||||||||||||| Sbjct 18849 TCGAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACAAAGATCTGCATG 18896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448274310629040