Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq974 127 3e-25 seq1170 122 1e-23 >seq974 Length=65609 Score = 127 bits (140), Expect = 3e-25 Identities = 187/262 (71%), Gaps = 2/262 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| | | || || ||||||||||| || || |||||||| || | Sbjct 10629 CGCCAAGCGCCACCGCA-AGGTGTTGCGCGATAACATCCAGGGCATTACCAAGCCGGCCA 10687 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 | || || |||| || || ||||| || |||||| |||| || ||| |||| || |||| Sbjct 10688 TTCGCCGCTTGGCCCGCCGAGGTGGTGTGAAGCGTATCTCGGGGTTGATCTACGAGGAGA 10747 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | ||| | ||| ||||||| || | |||| | ||| || || || || | Sbjct 10748 CACGCAACGTTCTCAAGGTCTTCCTTGAGTCTATTATTCGTGACGCAGTCACGTACACGG 10807 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || ||||| |||||| | |||||| || ||||||| | || || || | Sbjct 10808 AGCACGCGCGCCGAAAGACCGTCACCGCTATGGATGTCATCTATGCGCTTAAGCGCCAGG 10867 Query 16671 GCCGTAAGATTTATGGTTTTGG 16692 |||| | | || ||||| || Sbjct 10868 GCCGCACCTTGTACGGTTTCGG 10889 >seq1170 Length=21586 Score = 122 bits (134), Expect = 1e-23 Identities = 185/261 (71%), Gaps = 2/261 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || |||| | | || || ||||||||||| || ||||||||||| || || Sbjct 1123 GCCAAGCGCCACCGCA-AGGTGTTGCGCGATAACATCCAGGGGATCACCAAGCCGGCCAT 1065 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || |||||||||||||| ||||| || ||||| |||| |||||| | || || |||| Sbjct 1064 TCGCCGTCTGGCTCGTCGAGGTGGTGTGAAGCGCATCTCGGGATTGATTTACGAGGAGAC 1005 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | || | ||| | ||||| || || | || | ||| || | || || || Sbjct 1004 ACGTAACGTGCTCAAGGTGTTCCTGGAGTCCATCATTCGTGACGCCGTGACGTACACTGA 945 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| | ||||| ||||| | ||||| | | |||||| | || || || || Sbjct 944 GCACGCACGCAGAAAGACCGTCACGGCTATGGACGTGATTTATGCACTCAAGCGCCAGGG 885 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 |||| | | || || ||||| Sbjct 884 ACGTACGCTGTACGGCTTTGG 864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79072444278702