Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq250 648 0.0 seq316 540 1e-148 seq1212 86.0 8e-12 >seq250 Length=47047 Score = 648 bits (718), Expect = 0.0 Identities = 731/970 (75%), Gaps = 14/970 (1%) Strand=Plus/Plus Query 135365 TGGGAACAGTTCTGCGAGTGGGTTACCAGCACCGACAACCGCCTCTATGTGGGTTGGTTT 135424 ||||||| |||||| |||||||| ||||| || ||||| | ||| | ||||||||| Sbjct 1231 TGGGAACGTTTCTGCTCTTGGGTTACAAGCACTGAAAACCGTTTATATATCGGTTGGTTT 1290 Query 135425 GGAACGCTGATGATTCCTACTCTTCTCGCAGCTGCTATCTGCTTT-ATTGTTGCTTTCAT 135483 || | ||||||||||| | | ||||| || |||| || || |||| ||| | Sbjct 1291 GGTGTATTAATGATTCCTACATTATTAACAGCTACT-TCTGTATTCATCATTGCATTCGT 1349 Query 135484 CGCTGCACCTCCCGTCGATATTGACGGCATCCGCGAACCTGTTGCTGGTTCTCTAATGTA 135543 ||||| ||||| || |||||||| || ||||| ||||| |||||||||||| || | || Sbjct 1350 TGCTGCTCCTCCAGTTGATATTGATGGTATCCGTGAACCAGTTGCTGGTTCTTTACTATA 1409 Query 135544 CGGAAATAACATCATCTCTGGTGCTGTTATCCC---TTCTAGCAACGCCATCGGCCTTCA 135600 ||| || ||||| ||||||||||||||||| || |||| || || || || |||| Sbjct 1410 CGGTAACAACATTATCTCTGGTGCTGTTATTCCAAGTTCT-GCT--GCTATTGGTATTCA 1466 Query 135601 CTTCTATCCCATCTGGGAAGCTGCTTCTCTTGATGAGTGGCTATATAATGGTGGTCCTTA 135660 |||||| || || ||||||||||||||| | || |||||| |||| || ||||| || Sbjct 1467 CTTCTACCCAATTTGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGGTGCTA 1526 Query 135661 TCAACTAGTGGTCTTCCACTTCCTTATCGGTGTCTTCTCTTACATGGGTCGCGAGTGGGA 135720 | ||| | || || ||||| | | ||||| | ||||||||||| |||||||| Sbjct 1527 CCCTCTAATCGTATTACACTTTTTACTAGGTGTTGCTTGCTACATGGGTCGTGAGTGGGA 1586 Query 135721 ACTCTCTTACCGACTGGGTATGCGCCCTTGGATTTGTGTCGCTTACTCAGCCCCTGTTGC 135780 ||| ||||| | |||||||| |||||||| ||| || | ||| || || ||||| Sbjct 1587 ACTTAGCTACCGTTTAGGTATGCGTCCTTGGATCGCTGTTGCATTCTCTGCTCCAGTTGC 1646 Query 135781 CGCTGCTACTGCTGTTTTCCTGGTCTACCCCTTTGGACAAGGTTCTTTCAGTGATGGTAT 135840 ||||| |||||||| ||| || ||||||| |||| ||||| ||| ||||||||| Sbjct 1647 AGCTGCAACTGCTGTATTCTTGATCTACCCGATTGGTCAAGGCAGCTTCTCTGATGGTAT 1706 Query 135841 GCCGCTTGGCATTTCTGGAACTTTTAACTACATGCTTGTTTTCCAGGCAGAACACAACAT 135900 ||| | || |||||||| || || |||| |||| |||| ||||| || || || ||||| Sbjct 1707 GCCTTTAGGTATTTCTGGTACATTCAACTTCATGATTGTATTCCAAGCTGAGCATAACAT 1766 Query 135901 TCTCATGCATCCTTTCCACATGTTGGGAGTTGCTGGGGTCTTCGGTGGTTCTCTGTTCTC 135960 ||| ||||| || |||||| || || |||||||| || || ||||| ||||| ||| Sbjct 1767 TCTAATGCACCCATTCCACCAATTAGGTGTTGCTGGTGTATTTGGTGGATCTCTATTCAG 1826 Query 135961 TGCTATGCATGGATCTCTTGTCACCTCTAGTCTTGTACGTGAGACGACTGAGGTAGAATC 136020 ||||||||| || || || || || |||||| | | ||||| || ||||| ||||| Sbjct 1827 TGCTATGCACGGTTCACTAGTAACTTCTAGTTTAATCCGTGAAACAACTGAAAATGAATC 1886 Query 136021 CCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACTTACAACATTGTTGCTGCTCA 136080 |||||||||||||||||||||||||||||||| ||||| |||||||||||||| || Sbjct 1887 TGCTAACTATGGTTACAAGTTCGGTCAAGAAGAAGAAACTTATAACATTGTTGCTGCACA 1946 Query 136081 TGGTTACTTCGGTCGTCTGATCTTCCAATATGCGTCGTTCAACAACTCTCGTTCGCTACA 136140 ||||||||| |||||| | || ||||||||||| ||||||||||||||||| || || Sbjct 1947 TGGTTACTTTGGTCGTTTAATATTCCAATATGCTAGTTTCAACAACTCTCGTTCACTTCA 2006 Query 136141 CTTTTTCCTTGCTGCTTGGCCTGTTGTCGGTATCTGGTTTGCTGCCCTGGGCGTATCTAC 136200 ||| ||| | | | ||||| ||||| ||||| ||||| | | | ||||| || Sbjct 2007 CTTCTTCTTAGGTTTATGGCCAGTTGTAGGTATTTGGTTAACATCTATCTCTGTATCAAC 2066 Query 136201 GATGGCGTTCAACCTCAATGGATTCAACTTCAACCAGTCCATTGTA-TCTTCTG--AAGG 136257 |||||||| ||| | ||||| |||||||||||||| || |||| | | | |||| Sbjct 2067 TATGGCGTTTAACTTAAATGGTTTCAACTTCAACCAATC---TGTAGTTGACAGCCAAGG 2123 Query 136258 TCGTGTACTCAACACCTGGGCAGATGTGCTGAATCGTGCTGGTCTGGGTATGGAGGTGAT 136317 ||||||| | ||||| ||||| ||| | | || |||||| | |||||||| || || Sbjct 2124 TCGTGTAATTAACACTTGGGCTGATATCATTAACCGTGCTAACTTAGGTATGGAAGTTAT 2183 Query 136318 GCACGAGCGT 136327 ||| |||||| Sbjct 2184 GCATGAGCGT 2193 >seq316 Length=14323 Score = 540 bits (598), Expect = 1e-148 Identities = 746/1032 (72%), Gaps = 14/1032 (1%) Strand=Plus/Plus Query 137859 GGATGGTTCGATGTCTTGGATGACTGGATTAAACGAGATCGCTTTGTATTTGTGGGTTGG 137918 |||||||| ||| | | ||||||||| | || |||| || ||||| || | |||||| Sbjct 10149 GGATGGTTTGATCTTATAGATGACTGGTTGAAGAGAGACCGTTTTGTTTTCATAGGTTGG 10208 Query 137919 TCTGGACTACTACTTTTTCCCACTGCT--TATTTGGCCCTTGGTGGCTGGCTTACTGGCA 137976 ||||| || | || | || |||| ||| | ||| | ||||| |||||||| || | Sbjct 10209 TCTGGTTTATTGCTACTGCC--TTGCTCATATCTTGCCTTAGGTGGATGGCTTACAGGAA 10266 Query 137977 CAACGTTTGTTACAAGCTGGTACACCCACGGGTTGGCGTCTAGTT-AT-CTT-GAAGGCG 138033 | || ||||| ||| ||||| || || || || | | |||| || ||| ||||| Sbjct 10267 CTACTTTTGTAACATCTTGGTATACTCATGGTTTAG---CAAGTTCATACTTAGAAGGTT 10323 Query 138034 CTAATTTCCTCACAGCAGCTGTTTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTC 138093 ||| ||| | ||||| || ||||| ||||| ||| || |||||| || ||| || || Sbjct 10324 GTAACTTCTTAACAGCTGCAGTTTCAACTCCAGCTAATAGTATGGGACACTCT-TTATTA 10382 Query 138094 TACTT-TGGGGTCCTGAGTCTCAAGGAGATATCGTCCGCTGGTTCCAACTTGGGGGACTC 138152 | ||| ||||| || || ||||||| ||| || | |||| || | || || || Sbjct 10383 TTCTTGTGGGGACCAGAAGCTCAAGGCGATTTCACAAGATGGTGTCAGATAGGTGGTCTT 10442 Query 138153 TGGACTTTTGTGGCGCTCCACGGGGCCTTTAGTCTGATTGGATTCATGCTT-CGCCAGTT 138211 ||||||||| | || | || || || ||| | || || || || || || || ||||| Sbjct 10443 TGGACTTTTATAGCTTTACATGGCGCTTTTGGACTAATAGG-TTTTTGTTTACGTCAGTT 10501 Query 138212 TGAGATCTCTCGTCTGGTAGGCATCCGTCCCTACAACGCAATCGCATTCTCTGGTCCCAT 138271 |||||| | | || || || | | || || ||||| || || || || || || || Sbjct 10502 TGAGATTGCAAGACTTGTGGGTTTGAGACCTTATAACGCTATTGCTTTTTCAGGACCTAT 10561 Query 138272 CGCTGTGTTCGTCAGCGTGTTCCTGATGTATCCTTTGGGTCAATCCAGTTGGTTCTTTGC 138331 |||||||||| || || | ||||||||||| || ||| | |||||||| ||||| Sbjct 10562 ATCTGTGTTCGTATCAGTATTTTTAATGTATCCTTTAGGCCAAGCTAGTTGGTTTTTTGC 10621 Query 138332 TCCCTCCTTTGGTGTGGCAGCAATCTTCCGATTCCTGTTGTTCCTTCAGGGTTTCCATAA 138391 ||| |||||||| || || ||||| |||| | || ||| | |||||||| ||||| Sbjct 10622 TCCTAGTTTTGGTGTTGCTGCCATCTTTAGATTTTTATTATTCTTACAGGGTTTTCATAA 10681 Query 138392 CTGGACCCTCAACCCCTTTCATATGATGGGCGTAGCAGGTATTCTTGGTGGTGCTCTGCT 138451 |||||| | || || || ||||||||||| ||||| ||||||||||||||||| | | Sbjct 10682 CTGGACGTTAAATCCATTCCATATGATGGGTGTAGCTGGTATTCTTGGTGGTGCCTTATT 10741 Query 138452 CTGTGCTATTCATGGTGCTACAGTAGAAAATACTTTGTATGAAGATGGCGAACAATCAAA 138511 |||||||| ||||||||||| || |||||||| || | ||||||||| || | | Sbjct 10742 ATGTGCTATCCATGGTGCTACTGTTGAAAATACCTTATTTGAAGATGGTGACGCTGCGGA 10801 Query 138512 TACTTTTAAAGCATTTGAACCTACTCAAGAAGAAGAAACCTATTCAATGGTTACTGCTAA 138571 || |||| ||| ||| || |||||| |||||||| ||||||||||| || || || Sbjct 10802 CACATTTAGAGCTTTTACTCCAACTCAATCTGAAGAAACATATTCAATGGTAACAGCAAA 10861 Query 138572 CCGTTACTGGTCGCAAATCTTTGGAATTGCTTTTAGTAATAAGCGTTGGCTTCACTTCTT 138631 ||||| ||||| ||||| ||||| |||||||| ||| || | ||||| || ||||| Sbjct 10862 CCGTTTTTGGTCACAAATTTTTGGTGTTGCTTTTTCTAACAAAAGATGGCTACATTTCTT 10921 Query 138632 TATGCTCTTTGTTCCCGTCATGGGTCTCTGGACTAGTAGTATTGGTATTATTGGTCTTGC 138691 |||| | ||||| || || | ||| | ||||| ||| ||||| ||| | || | || Sbjct 10922 TATGTTGTTTGTACCAGTTACTGGTTTGTGGACAAGTTCAATTGGCATTGTAGGATTAGC 10981 Query 138692 TCTTAACCTACGAGCGTATGATTTCGTATCGCAAGAAATTCGTGCAGCAGAAGATCCTGA 138751 | || || |||| ||||| || ||||| || ||| || | || ||||| |||||||| Sbjct 10982 ATTAAATTTAAGAGCTTATGACTTTGTATCTCAGGAACTTAGAGCCGCAGAGGATCCTGA 11041 Query 138752 ATTCGAGACCTTCTACACCAAGAACATTCTTCTGAATGAAGGTCTGCGTGCCTGGATGGC 138811 ||| || || ||||| || || || ||||| |||| |||||| | ||||| |||||||| Sbjct 11042 ATTTGAAACATTCTATACTAAAAATATTCTATTGAACGAAGGTATTCGTGCATGGATGGC 11101 Query 138812 TCCTGTGGATCAACCTCACGAAAACTTTGTTTTTCCTGAAGAAGTATTGCCAAGAGGCAA 138871 | | ||||| ||||| ||||||||| | || || || || || ||||| | || || Sbjct 11102 TGCACAAGATCAGCCTCATGAAAACTTTATATTCCCAGAGGAGGTTCTGCCACGTGGAAA 11161 Query 138872 CGCTCTGTGATA 138883 ||| || | ||| Sbjct 11162 CGCCCTTTAATA 11173 >seq1212 Length=27810 Score = 86.0 bits (94), Expect = 8e-12 Identities = 74/89 (83%), Gaps = 2/89 (2%) Strand=Plus/Minus Query 163575 TATGGGGACATGGTGGAATTGGTAGACACACCAGACTTAAAATCTGTTGAGCGTAT-GCT 163633 ||||||| ||||||||| |||||||||| ||||||||||||||||||| | ||| | | Sbjct 7304 TATGGGGGTGTGGTGGAAT-GGTAGACACAACAGACTTAAAATCTGTTGATCATATCGGT 7246 Query 163634 CGTGGGGGTTCAACTCCCCCTGTCCCTAT 163662 ||| |||||||| |||| || |||||| Sbjct 7245 CGTAAGGGTTCAAGTCCCTTTGCCCCTAT 7217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627944341305600