Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq250 518 9e-143 >seq250 Length=47047 Score = 518 bits (574), Expect = 9e-143 Identities = 722/1012 (71%), Gaps = 0/1012 (0%) Strand=Plus/Plus Query 19299 TGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTTATGATTCCT 19358 ||||| ||||| || || ||||| | ||| | ||||||||||| ||| | ||||||||| Sbjct 1249 TGGGTTACAAGCACTGAAAACCGTTTATATATCGGTTGGTTTGGTGTATTAATGATTCCT 1308 Query 19359 TGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCGCCTGTAGAT 19418 ||| || | |||||| || || || | || || | || || || || || ||| Sbjct 1309 ACATTATTAACAGCTACTTCTGTATTCATCATTGCATTCGTTGCTGCTCCTCCAGTTGAT 1368 Query 19419 ATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATTATTTCT 19478 || ||||| || ||||| |||||| | || || ||| | ||||| ||||| ||||| ||| Sbjct 1369 ATTGATGGTATCCGTGAACCAGTTGCTGGTTCTTTACTATACGGTAACAACATTATCTCT 1428 Query 19479 GGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATCTGGGAAGCC 19538 || || || ||||||| || ||| || || | ||||| || || || |||||||| Sbjct 1429 GGTGCTGTTATTCCAAGTTCTGCTGCTATTGGTATTCACTTCTACCCAATTTGGGAAGCT 1488 Query 19539 GGCACTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTCTTCCACTTC 19598 | ||||||| ||||||||||||||||| || || | || | || || ||||| Sbjct 1489 GCTTCTTTAGACGAGTGGTTATACAACGGTGGGTGCTACCCTCTAATCGTATTACACTTT 1548 Query 19599 TTAATAGGAGTAGCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAGATTAGGAATG 19658 ||| |||| || || ||| ||| | |||||||||| ||| | ||||| ||| Sbjct 1549 TTACTAGGTGTTGCTTGCTACATGGGTCGTGAGTGGGAACTTAGCTACCGTTTAGGTATG 1608 Query 19659 AGACCATGGATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGCTGTGTTTCTC 19718 | || ||||| || |||| | || ||| | |||| || |||||| || | Sbjct 1609 CGTCCTTGGATCGCTGTTGCATTCTCTGCTCCAGTTGCAGCTGCAACTGCTGTATTCTTG 1668 Query 19719 GTTTACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTACT 19778 | ||||| |||| ||||| || || ||||||||||||| | ||||| |||||||| Sbjct 1669 ATCTACCCGATTGGTCAAGGCAGCTTCTCTGATGGTATGCCTTTAGGTATTTCTGGTACA 1728 Query 19779 TTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATG 19838 || ||||| ||| | ||||||||||| || || || || || ||||| || |||||| Sbjct 1729 TTCAACTTCATGATTGTATTCCAAGCTGAGCATAACATTCTAATGCACCCATTCCACCAA 1788 Query 19839 CTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTTTGGTT 19898 | ||||||||||| ||||| ||||||||||| ||| |||||||||||| | || Sbjct 1789 TTAGGTGTTGCTGGTGTATTTGGTGGATCTCTATTCAGTGCTATGCACGGTTCACTAGTA 1848 Query 19899 ACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTATGGCTATAAGTTC 19958 ||||| | ||| ||||||||||| ||| ||| |||||||| || |||||| Sbjct 1849 ACTTCTAGTTTAATCCGTGAAACAACTGAAAATGAATCTGCTAACTATGGTTACAAGTTC 1908 Query 19959 GGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTGATA 20018 || ||||| ||||| || ||||| ||||| |||||||| || |||||||| | || ||| Sbjct 1909 GGTCAAGAAGAAGAAACTTATAACATTGTTGCTGCACATGGTTACTTTGGTCGTTTAATA 1968 Query 20019 TTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGCTACTTTCCCC 20078 || ||||||||| |||||| || |||||||| | || ||||| | | | | || Sbjct 1969 TTCCAATATGCTAGTTTCAACAACTCTCGTTCACTTCACTTCTTCTTAGGTTTATGGCCA 2028 Query 20079 GTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAACCTTAATGGT 20138 || || || || ||| | || || || | | |||||||| || ||| | |||||| Sbjct 2029 GTTGTAGGTATTTGGTTAACATCTATCTCTGTATCAACTATGGCGTTTAACTTAAATGGT 2088 Query 20139 TTTAACTTTAACCAGTCAGTAGTTGATGTCAACGGAAAGATAATCCCAACATGGGCTGAT 20198 || ||||| ||||| || |||||||| | | || |||| || ||||||||| Sbjct 2089 TTCAACTTCAACCAATCTGTAGTTGACAGCCAAGGTCGTGTAATTAACACTTGGGCTGAT 2148 Query 20199 GTATTAAATAGAGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAATGCTCATAACTTC 20258 | | || | |||||| | || | ||||||||||| ||||| || ||||| |||||| Sbjct 2149 ATCATTAACCGTGCTAACTTAGGTATGGAAGTTATGCATGAGCGTAACGCTCACAACTTC 2208 Query 20259 CCACTTGATTTAGCTTCGGCTGAGTCAACAAACATTGCACTAACAGCTCCAG 20310 ||| | || ||||| || | ||| || | ||||| |||||||||||| Sbjct 2209 CCATTAGACTTAGCGTCTGGTGAATCTCTACCTGTTGCATTAACAGCTCCAG 2260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144436430254584