Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq250 576 2e-159 >seq250 Length=47047 Score = 576 bits (638), Expect = 2e-159 Identities = 723/990 (73%), Gaps = 4/990 (0%) Strand=Plus/Plus Query 211570 TTCTGCGACTGGGTAACATCAACAAACAACAGAATCTATGTTGGTTGGTTTGGTGTTCTT 211629 |||||| ||||| ||| || | ||| | | ||| | |||||||||||||| | Sbjct 1240 TTCTGCTCTTGGGTTACAAGCACTGAAAACCGTTTATATATCGGTTGGTTTGGTGTATTA 1299 Query 211630 ATGATCCCATGTCTTCTAGCTGCAACAACATGCTTTATCGTAGCATTCATCGCAGCACCT 211689 ||||| || | || | || || | || ||| | |||||| | || || ||| Sbjct 1300 ATGATTCCTACATTATTAACAGCTACTTCTGTATTCATCATTGCATTCGTTGCTGCTCCT 1359 Query 211690 CCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTTCATTCATGTATGGTAACAAC 211749 || |||||||| || || |||||||||||||| |||||||| || | || ||||||||| Sbjct 1360 CCAGTTGATATTGATGGTATCCGTGAACCAGTTGCTGGTTCTTTACTATACGGTAACAAC 1419 Query 211750 ATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTTTACACTTCTATCCTATC 211809 || ||||||||||| ||| ||||| ||| || || ||| | |||||||| || || Sbjct 1420 ATTATCTCTGGTGCTGTTATTCCAAGTTCTGCTGCTATTGGTATTCACTTCTACCCAATT 1479 Query 211810 TGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTGGTCCTTACCAGTTGGTAATC 211869 |||||||| || || | || |||||| | ||||| ||||| |||| | | | Sbjct 1480 TGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGGTGCTACCCTCTAATCGTA 1539 Query 211870 TTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGACAGTGGGAACTTTCATACCGT 211929 || ||||| | | || | | |||||||| | ||||||||||| |||||| Sbjct 1540 TTACACTTTTTACTAGGTGTTGCTTGCTACATGGGTCGTGAGTGGGAACTTAGCTACCGT 1599 Query 211930 TTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCACCTGTATCAGCAGCTTTCGCT 211989 ||||||||||||||||||||| |||||| | || || || || |||| || ||| Sbjct 1600 TTAGGTATGCGTCCTTGGATCGCTGTTGCATTCTCTGCTCCAGTTGCAGCTGCAACTGCT 1659 Query 211990 GTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAGACGGTATGCCTTTAGGTATA 212049 |||||| | | ||||| | ||||| || ||||| || ||||||||||||||||| Sbjct 1660 GTATTCTTGATCTACCCGATTGGTCAAGGCAGCTTCTCTGATGGTATGCCTTTAGGTATT 1719 Query 212050 TCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAACATAACATCCTTATGCACCCA 212109 || || ||||||||||||||| | ||||||||||| || |||||||| || ||||||||| Sbjct 1720 TCTGGTACATTCAACTTCATGATTGTATTCCAAGCTGAGCATAACATTCTAATGCACCCA 1779 Query 212110 TTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCATTATTCTCTGCTATGCACGGT 212169 ||||| ||||||||| ||| | || |||||| | ||||| ||||||||||||| Sbjct 1780 TTCCACCAATTAGGTGTTGCTGGTGTATTTGGTGGATCTCTATTCAGTGCTATGCACGGT 1839 Query 212170 TCTCTTGTTACATCTTCACTTATCCGTGAAACCACTGGTTTAGATTCACAGAACTATGGT 212229 || || || || ||| | ||||||||||| |||| || || ||||||||| Sbjct 1840 TCACTAGTAACTTCTAGTTTAATCCGTGAAACAACTGAAAATGAATCTGCTAACTATGGT 1899 Query 212230 TACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTTGCTGCACATGGATACTTCGGT 212289 ||||||||||| ||||||||||| || |||||||| |||||||||||||| ||||| ||| Sbjct 1900 TACAAGTTCGGTCAAGAAGAAGAAACTTATAACATTGTTGCTGCACATGGTTACTTTGGT 1959 Query 212290 AGACTTATCTTCCAGTATGCATCATTCAACAACAGCAGAAGTTTACACTTCTTCCTCGCA 212349 | | || ||||| ||||| ||||||||| | | ||||||||| | | Sbjct 1960 CGTTTAATATTCCAATATGCTAGTTTCAACAACTCTCGTTCACTTCACTTCTTCTTAGGT 2019 Query 212350 TCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGTATCTGCACAATGGCATTCAAC 212409 | |||||| ||| | || | |||||||| ||||| | | | || ||||| || ||| Sbjct 2020 TTATGGCCAGTTGTAGGTATTTGGTTAACATCTATCTCTGTATCAACTATGGCGTTTAAC 2079 Query 212410 CTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCATC--AGGTAAGGTTGTTCCTA 212467 ||||||| ||||||||||||||||| || ||||| || | |||| || || | Sbjct 2080 TTAAATGGTTTCAACTTCAACCAATCTGTAGTTGA--CAGCCAAGGTCGTGTAATTAACA 2137 Query 212468 CTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAGTTATGCACGAAAGAAATG 212527 |||||| |||| | ||||| | || ||| | ||||||||||||||||| || | || | Sbjct 2138 CTTGGGCTGATATCATTAACCGTGCTAACTTAGGTATGGAAGTTATGCATGAGCGTAACG 2197 Query 212528 CACACAACTTCCCACTTGACTTAGCATCTG 212557 | |||||||||||| | |||||||| |||| Sbjct 2198 CTCACAACTTCCCATTAGACTTAGCGTCTG 2227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807524775357840