Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq250 623 1e-173 seq316 544 9e-150 >seq250 Length=47047 Score = 623 bits (690), Expect = 1e-173 Identities = 749/1015 (74%), Gaps = 10/1015 (1%) Strand=Plus/Plus Query 170675 TGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTAATGATCCCA 170734 ||||| ||| |||||| || || | || | |||||||||||||| |||||||| || Sbjct 1249 TGGGTTACAAGCACTGAAAACCGTTTATATATCGGTTGGTTTGGTGTATTAATGATTCCT 1308 Query 170735 TGTCTTCTAACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCTCCAGTCGAT 170794 | |||| ||| || || ||||| | |||||| | |||||||||||||| ||| Sbjct 1309 ACATTATTAACAGCTACTTCTGTATTCATCATTGCATTCGTTGCTGCTCCTCCAGTTGAT 1368 Query 170795 ATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAACATCATCTCT 170854 || || || ||| | ||||||||||| |||||||| |||| ||||||||||| |||||| Sbjct 1369 ATTGATGGTATCCGTGAACCAGTTGCTGGTTCTTTACTATACGGTAACAACATTATCTCT 1428 Query 170855 GGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATCTGGGAAGCA 170914 |||||||| ||||| ||| || || || | |||||||| || || |||||||| Sbjct 1429 GGTGCTGTTATTCCAAGTTCTGCTGCTATTGGTATTCACTTCTACCCAATTTGGGAAGCT 1488 Query 170915 GCCACTATGGACGAGTGGTTGTACAACGGAGGTCCTTACCAGTTAGTTATTTTCCACTTC 170974 || || | ||||||||||| |||||||| || |||| || | | || ||||| Sbjct 1489 GCTTCTTTAGACGAGTGGTTATACAACGGTGGGTGCTACCCTCTAATCGTATTACACTTT 1548 Query 170975 CTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAGACTAGGAATG 171034 | | || | || |||||||||| | |||||||||| ||| | |||| ||| Sbjct 1549 TTACTAGGTGTTGCTTGCTACATGGGTCGTGAGTGGGAACTTAGCTACCGTTTAGGTATG 1608 Query 171035 AGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGCAGTATTCCTT 171094 | |||||||| ||| |||| ||| || || || | || ||| ||| |||||| | Sbjct 1609 CGTCCTTGGATCGCTGTTGCATTCTCTGCTCCAGTTGCAGCTGCAACTGCTGTATTCTTG 1668 Query 171095 GTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACG 171154 | || || | ||||| || ||||||||||||||||| ||||||| || ||||| Sbjct 1669 ATCTACCCGATTGGTCAAGGCAGCTTCTCTGATGGTATGCCTTTAGGTATTTCTGGTACA 1728 Query 171155 TTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCCCTTCCATATG 171214 |||||||||||| | || |||||||| || || ||||| ||||||||||| ||||| Sbjct 1729 TTCAACTTCATGATTGTATTCCAAGCTGAGCATAACATTCTAATGCACCCATTCCACCAA 1788 Query 171215 GCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGTTCTCTAGTG 171274 |||||| || ||| | || ||||| ||| |||||||| ||||||||||| ||||| Sbjct 1789 TTAGGTGTTGCTGGTGTATTTGGTGGATCTCTATTCAGTGCTATGCACGGTTCACTAGTA 1848 Query 171275 ACATCTTCTCTAATCAGAGAGACAACTGAGAACGAGAGTCAAAACTACGGCTATAAGTTC 171334 || ||| | ||||| | || |||||||| || || | ||||| || || |||||| Sbjct 1849 ACTTCTAGTTTAATCCGTGAAACAACTGAAAATGAATCTGCTAACTATGGTTACAAGTTC 1908 Query 171335 GGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTAATC 171394 || |||||||||||||| ||||||||||||||||| ||||| ||||| ||| | ||||| Sbjct 1909 GGTCAAGAAGAAGAAACTTATAACATTGTTGCTGCACATGGTTACTTTGGTCGTTTAATA 1968 Query 171395 TTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCTGTATTCCCT 171454 ||||| ||||| |||||||||||||||||| | ||||||||| | | | ||| || Sbjct 1969 TTCCAATATGCTAGTTTCAACAACTCTCGTTCACTTCACTTCTTCTTAGGTTTATGGCCA 2028 Query 171455 GTAGTCTGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACCTTAACGGA 171514 || || || | |||||||| ||||| | | | || ||||| || ||| | || || Sbjct 2029 GTTGTAGGTATTTGGTTAACATCTATCTCTGTATCAACTATGGCGTTTAACTTAAATGGT 2088 Query 171515 TTCAACTTCAACCAATCAGTTGTAGATGCAAACGGAAAGATTGT---ACCAACA--TGGG 171569 ||||||||||||||||| ||||| || | | ||| | || | |||| |||| Sbjct 2089 TTCAACTTCAACCAATC---TGTAGTTG--ACAGCCAAGGTCGTGTAATTAACACTTGGG 2143 Query 171570 GAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATGCACACA 171629 ||| | ||||| | || ||| | || ||||||||||||||||| | || || |||| Sbjct 2144 CTGATATCATTAACCGTGCTAACTTAGGTATGGAAGTTATGCATGAGCGTAACGCTCACA 2203 Query 171630 ACTTCCCACTAGACCTAGCATCTGCTGAGTCTACAACAGTTGCATTAACTGCACC 171684 |||||||| ||||| |||| |||| ||| ||| | | ||||||||||| || || Sbjct 2204 ACTTCCCATTAGACTTAGCGTCTGGTGAATCTCTACCTGTTGCATTAACAGCTCC 2258 >seq316 Length=14323 Score = 544 bits (602), Expect = 9e-150 Identities = 749/1044 (72%), Gaps = 25/1044 (2%) Strand=Plus/Plus Query 171791 ATGGTTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTC 171850 ||||||||| || | ||||| ||||| |||||||| ||||| || ||||| || ||||| Sbjct 10151 ATGGTTTGATCTTATAGATGACTGGTTGAAGAGAGACCGTTTTGTTTTCATAGGTTGGTC 10210 Query 171851 TGGTCTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTAC 171910 |||| | || || | ||||| | || || || | || || ||| | ||||||||| Sbjct 10211 TGGTTTATTGCTACTGCCTTGCTCATATCTTGCCTTAGGTGGATGGCTTACAGGAACTAC 10270 Query 171911 TTTCGTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAACTT 171970 ||| || || || ||||| || |||||| | ||| ||||| | || || ||||| Sbjct 10271 TTTTGTAACATCTTGGTATACTCATGGTTTAGCAAGTTCATACTTAGAAGGTTGTAACTT 10330 Query 171971 TTTAACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTATG 172030 ||||| || ||||| ||||| || | | || |||||| || | |||| ||| | || Sbjct 10331 CTTAACAGCTGCAGTTTCAACTCCAGCTAATAGTATGGGACACTCTTTATTATTCTTGTG 10390 Query 172031 GGGACCTGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTT 172090 |||||| || || ||||| ||| | | |||||| ||| ||||||| || |||| || Sbjct 10391 GGGACCAGAAGCTCAAGGCGATTTCACAAGATGGTGTCAGATAGGTGGTCTTTGGACTTT 10450 Query 172091 TGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTA-GACAGTTTGAGATTG 172149 | |||| |||||||| | |||||||| |||||||| || ||| | ||||||||||||| Sbjct 10451 TATAGCTTTACATGGCGCTTTTGGACTAATAGGTTT-TTGTTTACGTCAGTTTGAGATTG 10509 Query 172150 CAGGACTTGTTGGGATACGTCCTTACAACGCACTAGCATTCTCAGCAGTTATTGCAGTAT 172209 || ||||||| || | | ||||| ||||| | || || |||| | ||| | || | Sbjct 10510 CAAGACTTGTGGGTTTGAGACCTTATAACGCTATTGCTTTTTCAGGACCTATATCTGTGT 10569 Query 172210 TCACGAGCA-TCTTTCTAATATATCCATTAGGTCAGCATAGTTGGTTCTTCGCACCTTCA 172268 || | || | ||| |||| ||||| ||||| || ||||||||| || || ||| Sbjct 10570 TC-GTATCAGTATTTTTAATGTATCCTTTAGGCCAAGCTAGTTGGTTTTTTGCTCCTAGT 10628 Query 172269 TTTGGTGTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATATAACT 172328 |||||||| || || |||||| | | | | |||||| |||||||||| || || || Sbjct 10629 TTTGGTGTTGCTGCCATCTTTAGATTTTTATTATTCTTACAGGGTTTTCATAACTGGACG 10688 Query 172329 CTTAATCCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGTGCC 172388 | |||||||| ||||||||||||||||| ||||| |||||||| || ||| ||||||| Sbjct 10689 TTAAATCCATTCCATATGATGGGTGTAGCTGGTATTCTTGGTGGTGCCTTATTATGTGCT 10748 Query 172389 ATACATGGTGCAACAGTACAGAACACATTGTATGAAGACACATCACAATACACTGAAGGT 172448 || |||||||| || || | || || || | |||||| || | Sbjct 10749 ATCCATGGTGCTACTGTTGAAAATACCTTATTTGAAGA---------------TG--GTG 10791 Query 172449 AAGATTCAATCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAAACTTATAGT 172508 | | | | | || || ||||| || ||| || || |||||||| ||| Sbjct 10792 ACGCTGCGGAC----ACATTTAGAGCTTTTACTCCAACTCAATCTGAAGAAACATATTCA 10847 Query 172509 ATGATTACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACAAAAGA 172568 ||| | || || ||| | || |||||||| || |||||| | || ||||| ||||||||| Sbjct 10848 ATGGTAACAGCAAACCGTTTTTGGTCACAAATTTTTGGTGTTGCTTTTTCTAACAAAAGA 10907 Query 172569 TTCTTACACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTATAGGT 172628 | |||| ||| |||||||||| ||||| || | ||| |||||||| || || || Sbjct 10908 TGGCTACATTTCTTTATGTTGTTTGTACCAGTTACTGGTTTGTGGACAAGTTCAATTGGC 10967 Query 172629 ATCGTAGGTCTTGCACTTAACCTCAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCA 172688 || ||||| | ||| | || | ||||| || |||||||||||||| || | ||||| Sbjct 10968 ATTGTAGGATTAGCATTAAATTTAAGAGCTTATGACTTTGTATCTCAGGAACTTAGAGCC 11027 Query 172689 GCAGAAGACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTTAATGAAGGTATG 172748 ||||| || || || |||||||| ||||| ||||| || ||||| | || |||||||| Sbjct 11028 GCAGAGGATCCTGAATTTGAAACATTCTATACTAAAAATATTCTATTGAACGAAGGTATT 11087 Query 172749 AGAGCATGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAGAAGTC 172808 | ||||||||| | | ||||| || ||||| |||||| | |||||||| || || Sbjct 11088 CGTGCATGGATGGCTGCACAAGATCAGCCTCATGAAAACTTTATATTCCCAGAGGAGGTT 11147 Query 172809 TTGCCACGAGGCAACGCACTATAA 172832 ||||||| || ||||| || ||| Sbjct 11148 CTGCCACGTGGAAACGCCCTTTAA 11171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570247315122960