Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq963 152 6e-32 >seq963 Length=27641 Score = 152 bits (168), Expect = 6e-32 Identities = 304/446 (68%), Gaps = 6/446 (1%) Strand=Plus/Plus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || || || |||||||||||||||||||||| ||| || || ||| ||||||||| Sbjct 17247 CACGCAAAGTCGCAGTGCAGACCCTCGTCTCGCGAAATCAGCTCATTGCTGAACGTGAGT 17306 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 || ||||| || || ||||| || |||||||| || | ||| || || || || || Sbjct 17307 CCAGGCATGAGCCCGCGCTTCTTGAGCCAAAAGATTGCGCAGAAAGAGCCGGAGAAAAAA 17366 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATG-TAT 33482 |||||||| ||||| ||||| || | || | |||| || | ||| || ||| || Sbjct 17367 ATTCCTTCGACTGCGGCAAACGCGACCAGACGCTCTGCAAAGGATGCG-TGCGATGAGAT 17425 Query 33483 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 33542 |||| | |||||| |||||||| || || || || || ||| ||| || || | || Sbjct 17426 CCACGTCAAAGCCCACTCGGCCTTTTTCTTCACGCAGGGAATCTCTTCCATAGCGTGGAA 17485 Query 33543 GAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCA--AAAGACTATACATT 33600 ||||| ||| ||||| | || || || || || || | || || ||| || Sbjct 17486 GAGATGGTTCTTTTCCTCTGGGTCGGACACGTACGTGTCAATGAGCAAGGA--GTACGTT 17543 Query 33601 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33660 ||||| || ||||| || || || ||||| || || || || || | || || | ||| Sbjct 17544 TCCGAGTGGATGTTCTCCATCGCGATCTGGAAGCCATAAAAGCAGCGCGCTTCCGGGATC 17603 Query 33661 TGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCA 33720 || || || | | || || || |||||| || || |||||||| || || Sbjct 17604 TGGACGTCCTTCGAGAAGCGCTCGCACAAATTCTCCAGAACGATTCCGTCCGATGCGGCG 17663 Query 33721 AAAAACGCCAATACATGTTTTATAAA 33746 || || || | ||||| || || || Sbjct 17664 AAGAAGGCGAGCACATGCTTGATGAA 17689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622923730464240