Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1059 286 9e-72 seq963 116 1e-20 >seq1059 Length=17963 Score = 286 bits (316), Expect = 9e-72 Identities = 527/766 (69%), Gaps = 10/766 (1%) Strand=Plus/Minus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 |||||||| ||| |||| || ||| |||||| | || | || ||| | || Sbjct 16608 TTCACGCATGCCTCGCCGACTTTGTTCAATGCAAGCACGCCGCGCCCGCAGCTCAGCTCG 16549 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 |||||||| || | ||||| || || || ||||| || |||| ||| || || ||| Sbjct 16548 TGCTTTCTGCTGACCATGAAAGAAGACTCGATCGAAGGCATCTATGATACGCTGAAGCGC 16489 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA 363726 || || | ||||||||| || ||||| || ||| | || || || | ||||| Sbjct 16488 TGCGCGGTGATTTCCAAGTCAGCCGGCGGCATCGGTCTCTCCATTTCGAACATCCGTGCC 16429 Query 363727 CAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGT 363786 || || |||||||| |||||| || | || || || | || || ||||| || Sbjct 16428 ACCAAGAGCTACATTCGGGGCACAAATGGCTCGTCAAACGGCATTGTACCAATGCTGCGA 16369 Query 363787 GTGTTTGACAAT---ACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCG 363843 |||| ||||| || ||| | ||||| || ||||| || || ||||||||||| ||| Sbjct 16368 GTGT---ACAATGACACAGCGCGTTACGTGGATCAGGGCGGTGGTAAGCGCAAAGGTGCG 16312 Query 363844 TTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAA 363903 ||||| || | ||||| || ||||| ||||||||||| || || || || || Sbjct 16311 TTTGCCTGCTACATTGAGCCGTGGCACGCCGACATTTTTGAGTTCCTCGACCTGCGCAAG 16252 Query 363904 AACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGAC 363963 ||| || || || || | ||||| |||||||| || || || || ||| | ||| Sbjct 16251 AACCACGGCAAGGAAGAGTCACGTGCGCGTGATCTCTTTTACGCGCTGTGGACGCCGGAC 16192 Query 363964 CATTTTATGAAGCGCGTGGAGGCAGGTAAGA-ATTGGTCACTCTTTTGCCCACACGAATG 364022 | || |||||||| ||||||| ||| || | ||| ||||| ||||| ||||| Sbjct 16191 CTGTTCATGAAGCGAGTGGAGG-AGGACGGACAGTGGAGCCTCTTCTGCCCCAACGAAGC 16133 Query 364023 TCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATC 364082 || || || | ||| |||||| |||| | || || ||| ||||| ||| Sbjct 16132 GCCGGGACTGTGCGACACGTGGGGTCCGGACTTCGAGGCGCTGTACACCAAGTACGAAAA 16073 Query 364083 GGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTC 364142 || || || || |||| ||||| || | || || |||||||| | | || || Sbjct 16072 CGAAGGCCGCGCGCGCGAGACGATTCCGGCGCGCAAACTGTGGTTTGCGGTGCTTGACTC 16013 Query 364143 GCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAA 364202 |||||||||||| || ||||| || ||| ||||||| ||| | |||| ||||| || Sbjct 16012 GCAGATTGAGACCGGCACACCGTACATGCTGTACAAGGATGCCGCCAACTCAAAGTCGAA 15953 Query 364203 CCAGCAGCACCTTGGTACAATTCAGCAG-AGCAACCTATGTACCGAGATTATTGAATACA 364261 ||||||| |||| || |||| || |||| ||||| | || || || || ||||| |||| Sbjct 15952 CCAGCAGAACCTCGGCACAA-TCCGCAGCAGCAATTTGTGCACAGAAATCATTGAGTACA 15894 Query 364262 CCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCT 364307 | || || |||||| ||||| || ||| | ||||| || ||||| Sbjct 15893 CAGCACCTGACGAGGTGGCCGTGTGCAACTTGGCGTCCATTGCGCT 15848 >seq963 Length=27641 Score = 116 bits (128), Expect = 1e-20 Identities = 345/523 (66%), Gaps = 13/523 (2%) Strand=Plus/Minus Query 22435 AAGAATAAGGCAGATTGGGCGCTGAAATGGATGAACAATGAACGT-TCATTCGCGGAACG 22493 ||||| ||||| || ||||| ||| ||||| || | ||| || || || || || Sbjct 17455 AAGAAAAAGGCCGAGTGGGCTTTGACGTGGATCT-CATCGCACGCATCCTTTGCAGAGCG 17397 Query 22494 TCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTT 22553 ||| | || ||||| | || ||||| ||||| || || || | || || |||||||| Sbjct 17396 TCTGGTCGCGTTTGCCGCAGTCGAAGGAATTTTTTTCTCCGGCTCTTTCTGCGCAATCTT 17337 Query 22554 TTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCG 22613 |||||| || || || | | ||||| || || ||||| |||||| | ||| || Sbjct 17336 TTGGCTCAAGAAGCGCGGGCTCATGCCTGGACTCACGTTCAGCAATGAGCTGATTTCGCG 17277 Query 22614 AGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATCATAT-CATTCATA 22672 ||| |||||||| || ||| |||||||| | | || | ||| | | || | Sbjct 17276 AGACGAGGGTCTGCACTGCGACTTTGCGTGCCTCTTGTA----CAGCATGTGCCCGCAGA 17221 Query 22673 AACTTCCATATGAAACTGTACTTGATATTATTACAAATGCAGTT--GAACTTGAACGTCT 22730 | || || | ||||| || || | || || || | || ||| | | ||| | Sbjct 17220 AGCTGCCGAACGAAACGGTGCTCAACATCATCACGAGCGCTGTTGCGTGCGAGAAGG--A 17163 Query 22731 ATTTATTTGCGAGGCGTTACCAGTAAGTC-TCATTGGTATCAATGCCGAATCAATGAGTA 22789 ||||||| || ||| | || || | | | || || || || |||| ||| Sbjct 17162 ATTTATTATTGACGCGCTGCC-GTGCGACTTGATCGGGATGAACAGCGAACTTATGGCGC 17104 Query 22790 CATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCAAAGCATTATA 22849 ||||||| | ||||| || || || || | || ||||| | | ||| ||| Sbjct 17103 AATATATTGAGTTTGTCGCCGACCGCCTGCTCCAGTCCCTCGGGCACGAAAAAGTTTACC 17044 Query 22850 ACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTTCT 22909 ||| | || || ||||| |||||||| || ||||| || ||||| |||||||| || | Sbjct 17043 ACGCCCGCAACCCGTTTGACTGGATGGAGCTGATTTCGCTCGAAGGGAAGACCAACTTTT 16984 Query 22910 TCGAAAAAAGAGTTGGTGAATACCAAAAAGCAGGTGTTATGGA 22952 | || || | || || || |||||||| || ||||| ||||| Sbjct 16983 TTGAGAAGCGTGTGGGAGAGTACCAAAAGGCCGGTGTGATGGA 16941 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303303268556948