Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq963 159 3e-34 seq970 134 1e-26 seq1200 131 2e-25 seq1059 114 1e-20 seq2049 91.5 1e-13 >seq963 Length=27641 Score = 159 bits (176), Expect = 3e-34 Identities = 357/521 (69%), Gaps = 24/521 (5%) Strand=Plus/Minus Query 46084 ATGCCGTGCGTGCGCAAGAAAA---CCGACTGGGCGATGAAGTGGATCAACAGCAGCACC 46140 || || |||||| ||||||| |||| ||||| ||| ||||||| || | |||| Sbjct 17467 ATTCCCTGCGTG---AAGAAAAAGGCCGAGTGGGCTTTGACGTGGATCT-CATC-GCAC- 17414 Query 46141 GCGACTTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGC 46200 || | || || |||||| |||| || ||||| || || || | ||||| || ||| Sbjct 17413 GCATCCTTTGCAGAGCGTCTGGTCGCGTTTGCCGCAGTCGAAGGAATTTTTTTCTCCGGC 17354 Query 46201 AGTTTTGCCGCCATCTTTTACATCAA-AACCAAGGGCATCATGCCCGGCCTGACGTTTAG 46259 ||| ||| ||||||| |||| || | |||| ||||||| || || ||||| || Sbjct 17353 TCTTTCTGCGCAATCTTTTGGCTCAAGAAGCGCGGGC-TCATGCCTGGACTCACGTTCAG 17295 Query 46260 CAACGAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACTATAA 46319 ||| |||||||| ||||| |||||||| ||||| ||||||||||| |||| || | Sbjct 17294 CAATGAGCTGATTTCGCGAGACGAGGGTCTGCACTGCGACTTTGCGTGCCTCTTGTACAG 17235 Query 46320 CACTCGCGTGCACG-ACAAGCTTGCGCCCGACACCGTGCTGAGCATGTTCAAGGAGGCGG 46378 || |||| || | ||||| || ||| || ||||| | ||| ||| | || | Sbjct 17234 CA----TGTGCCCGCAGAAGCTGCCGAACGAAACGGTGCTCAACATCATCACGAGCGCTG 17179 Query 46379 TGGCCATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAAC- 46437 | || |||||||| ||| ||| | ||| ||||| | | || | || |||||| Sbjct 17178 TTGCGTGCGAGAAGGAATTTATTATTGACGCGCTGCCGTGCGACTTGATCGGGATGAACA 17119 Query 46438 GCACAGTCAATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCTTCAC 46497 || | | | | || | || || |||||||| || ||||| |||||| ||| | | Sbjct 17118 GCGAACTTATGGCGC-AATATATTGAGTTTGTCGCCGACCGCCTGCTC---CAGTCCCTC 17063 Query 46498 CAGC-CGAAGCATTTT--CACGCGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTG 46554 || |||| | ||| ||||| ||||| || ||||| | ||| | || || || Sbjct 17062 GGGCACGAAAAAGTTTACCACGCCCGCAACCCGTTTGACTGGATGGAGCTGATTTCGCTC 17003 Query 46555 GAGGGCAAAACTAATTTTTTCGAAAAGCGCGTCGGCGAGTA 46595 || || || || || ||||| || ||||| || || ||||| Sbjct 17002 GAAGGGAAGACCAACTTTTTTGAGAAGCGTGTGGGAGAGTA 16962 >seq970 Length=23808 Score = 134 bits (148), Expect = 1e-26 Identities = 171/234 (73%), Gaps = 1/234 (0%) Strand=Plus/Plus Query 131003 ATGAG-CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAA 131061 ||||| |||||||||| |||||| || || || | |||||||||||| || ||||| || Sbjct 22500 ATGAGGCCACCGCGCAGACGCAGAACCAAGTGCAAGGTCGACTCCTTCTGGATGTTATAG 22559 Query 131062 TCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCC 131121 || || || || |||||| ||||||||||| || | || || ||||||||||| Sbjct 22560 TCTGACAGTGTTCGTCCGTCCTCCAGCTGCTTGCCCGCAAAAATCAAGCGCTGCTGGTCT 22619 Query 131122 GGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGAC 131181 || ||||| ||||| ||||| || ||| ||||| | || | || || | |||| Sbjct 22620 GGCGGGATGCCTTCCTTGTCTTGAATCTTCGCCTTGACATTATCGATGGTGTCCGAGGAC 22679 Query 131182 TCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 |||| || | || | || || || || || || || ||||||||||||||| Sbjct 22680 TCGACCTCCAACGTGATTGTCTTGCCCGTGAGGGTCTTGACGAAAATCTGCATG 22733 >seq1200 Length=24482 Score = 131 bits (144), Expect = 2e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| ||||||| |||||||| || || | ||| |||||||| ||||||||||| || Sbjct 18668 GCCTCCGCGCAGGCGCAGCACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCCGA 18727 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | |||||| ||||||||||||||| || ||| |||| || |||||||| || || || Sbjct 18728 GAGCGTGCGCCCGTCCTCTAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGATCTGGCGG 18787 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| || ||| ||||| | || | || || | |||||| | Sbjct 18788 GATGCCCTCCTTGTCCTGAATCTTCGCCTTGACGTTGTCGATCGTGTCCGAGGACTCCAC 18847 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGA 131236 |||| || | || || || || || || || || || |||||||||| Sbjct 18848 CTCGAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACAAAGATCTGCATGA 18897 >seq1059 Length=17963 Score = 114 bits (126), Expect = 1e-20 Identities = 570/889 (64%), Gaps = 33/889 (4%) Strand=Plus/Plus Query 145617 TATTGACGGCGATCGACGCCAAATTACAAACTGCCGTCTCCTCGGCGTCGCTGTATTGTA 145676 |||| | || || |||||||| || || || ||| ||| || | | |||| | | Sbjct 15843 TATTCAGCGCAATGGACGCCAAGTTGCACACGGCCACCTCGTCAGGTGCTGTGTACTCAA 15902 Query 145677 CGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATT--ACTTTT 145734 ||| || | |||||||||||| | ||| || || || || ||||| || ||||| Sbjct 15903 TGATTTCTGTGCACAAATTGCTGCTGCGGATTGTGCCGAGGTTCTGCTGGTTCGACTTTG 15962 Query 145735 CCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCGTCTC--- 145791 |||| || |||||||| |||||||||||| ||| ||||| | ||||| || Sbjct 15963 A--GTTGGCGGCATCCTTGTACAGCATGTACGGTGTGCCGGTCTCAATCTGCGAGTCAAG 16020 Query 145792 CACGATAAAACGGTGCAAGTCCTGCGCACGCACCTGCTGCTGGTAGCGGCCCTCTTCTTC 145851 ||| ||| | || | |||| | | | || | |||||| || | ||| Sbjct 16021 CACCGCAAACCA---CAGTTTGCGCGCCGGAATCGTCTCGCGCGCGCGGCCTTCGTTTTC 16077 Query 145852 GTATTTCCTGTAGAGCTCCTCAAACGCGGAACCGTAGCAATCGGACAGGCCGGGACACTT 145911 ||| || |||| ||| |||| || | | ||| | ||| |||| || || | ||| Sbjct 16078 GTACTTGGTGTACAGCGCCTCGAAGTCCGGACCCCACGTGTCGCACAGTCCCGG-CGCTT 16136 Query 145912 -GTTGGGACACATCAGCGACCATACGCCGTTGGCGTTGACGCGCTCCATAAACAAATCTG 145970 |||||| || | || ||| |||| | | || |||| ||| |||| || | Sbjct 16137 CGTTGGGGCAGAAGAGGCTCCACTGTCCGTCCTCCTCCACTCGCTTCATGAACAGGTCCG 16196 Query 145971 GCACCCACAGCGCGTACATCAAGTCGCGCGCTTTGCAATCCTCAGCACCCATGTT-TCGC 146029 || |||||||||||| | | || ||||| | || || || ||| | || Sbjct 16197 GCGTCCACAGCGCGTAAAAGAGATCACGCGCACGTGACTCTTCCTTGCCGTGGTTCTTGC 16256 Query 146030 TTCAAATTAAGCACACT-ATAGATGTCCGCGTGCCACGGTTCAATATAGACGGCGAGGGC 146088 || | || | ||| | | ||||| ||||||||||| ||||| ||| ||| | || Sbjct 16257 G-CAGGTCGAGGA-ACTCAAAAATGTCGGCGTGCCACGGCTCAATGTAGCAGGCAAACGC 16314 Query 146089 TCCTTTTCGTTTGCCACC---CTGGTCCACGTGACGTACCATGTTGTTAAAGACGCGCAC 146145 ||||| || || ||||| ||| ||||||| ||| | ||| || | || |||| Sbjct 16315 ACCTTTGCGCTTACCACCGCCCTGATCCACGTAACGCGCTGTGTCATTGTACACTCGCAG 16374 Query 146146 CATGGGCTCGACGCCGCTGGCTACGCCGTTCGTA----GAGTTTAT-TCT-GGTGCCGCG 146199 ||| || | | |||| | | ||| || || || | || ||| |||| | || Sbjct 16375 CATTGGTACAATGCCGTTTGACGAGCCATTTGTGCCCCGAATGTAGCTCTTGGTGGCACG 16434 Query 146200 GGAGCGCACGCAATGAACATTCACGCCGAGACCGCCGCCGTACTTGGATATAGCGGCGCA 146259 | | | | |||| | | | ||| |||||| | ||||||| || | ||||| Sbjct 16435 GATGTTC--GAAATGGAGAGAC----CGATGCCGCCGGCTGACTTGGAAATCACCGCGCA 16488 Query 146260 GTCGCCG-AGCGTCTCGTAGATGCCGTCAATGCTATCGCTTCGAATGCCGAGCAGAAAGC 146318 | ||| ||||| || |||||||| || || || | ||| |||||||||| Sbjct 16489 G-CGCTTCAGCGTATCATAGATGCCTTCGATCGAGTCTTCTTTCATGGTCAGCAGAAAGC 16547 Query 146319 ACGAGCACATCTGCGCCATCGGCGTCCCCGCCGAGAACAACGTCGGGCTCGCGTGCGTAA 146378 |||||| | ||||| |||||| | || |||||| ||||| || ||||| | Sbjct 16548 ACGAGCTGAGCTGCGGGCGCGGCGTGCTTGCATTGAACAAAGTCGGCGAGGCATGCGTGA 16607 Query 146379 ACATTTTTCGGCTCATCATCCGATACGTTTCGATAGCGTCTTGAATGTCGTCGCCATGAA 146438 | | ||| | || ||| ||||| |||| | || | ||||||| || | Sbjct 16608 AGAACTTTTGCGACAACATTTCGTACGTCTCGAGAACGCTCGGGATGTCGTGCATGTGGA 16667 Query 146439 TGCCCAAAGCGACGCGCATGAGCATGTGTTGGGGCCGCTCCGCCACTTG 146487 |||| | || |||||||| |||||||| || || |||||| |||| || Sbjct 16668 TGCCTACTGCCACGCGCATCAGCATGTGCTGCGGTCGCTCCACCACCTG 16716 >seq2049 Length=21382 Score = 91.5 bits (100), Expect = 1e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || |||| |||||||| || || | ||||||||||| || |||||||| || | Sbjct 21255 CCTCCACGCAGGCGCAGCACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCTGAC 21314 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| |||||||| || ||| | || | |||||||||||||| ||| Sbjct 21315 AGCGTGCGGCCGTCCTCCAGCTGCTTTCCGGCGAAAATCAGGCGCTGCTGGTCCGGCGGG 21374 Query 131128 ATTCCTTC 131135 || || || Sbjct 21375 ATGCCCTC 21382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471995016917760