Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq970 93.3 3e-14 seq1200 86.0 5e-12 >seq970 Length=23808 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| |||| || |||||||| || ||||| ||||| | | Sbjct 22506 CCACCGCGCAGACGCAGAACCAAGTGCAAGGTCGACTCCTTCTGGATGTTATAGTCTGAC 22565 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| ||||||||| || ||||||||| |||| | ||||| ||||| || Sbjct 22566 AGTGTTCGTCCGTCCTCCAGCTGCTTGCCCGCAAAAATCAAGCGCTGCTGGTCTGGCGGG 22625 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||| || ||||| ||| | | ||| || | | | ||||| || ||| Sbjct 22626 ATGCCTTCCTTGTCTTGAATCTTCGCCTTGACATTATCGATGGTGTCCGAGGACTCGACC 22685 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 |||| ||||| || || || || || || ||||| ||||||||||| ||| Sbjct 22686 TCCAACGTGATTGTCTTGCCCGTGAGGGTCTTGACGAAAATCTGCATGTTG 22736 >seq1200 Length=24482 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | ||| |||| || || ||||||||||| || ||||||||||| | Sbjct 18669 CCTCCGCGCAGGCGCAGCACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCCGAG 18728 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || ||||||| | || || ||||| | || | ||||| || || || Sbjct 18729 AGCGTGCGCCCGTCCTCTAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGATCTGGCGGG 18788 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | |||||| ||||| ||| | | ||| || | | | | ||||| || |||| Sbjct 18789 ATGCCCTCCTTGTCCTGAATCTTCGCCTTGACGTTGTCGATCGTGTCCGAGGACTCCACC 18848 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||| || || || |||||||| || ||||| |||||||| Sbjct 18849 TCGAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACAAAGATCTGCAT 18895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405073119851860