Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq963 147 3e-30 seq1059 129 7e-25 >seq963 Length=27641 Score = 147 bits (162), Expect = 3e-30 Identities = 305/447 (68%), Gaps = 8/447 (2%) Strand=Plus/Plus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || || || |||||||| ||||||||||||| ||| | || ||| ||||||||| Sbjct 17247 CACGCAAAGTCGCAGTGCAGACCCTCGTCTCGCGAAATCAGCTCATTGCTGAACGTGAGT 17306 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAA 32779 || ||||| || || ||||| || |||||||| || | |||| || || || || || || Sbjct 17307 CCAGGCATGAGCCCGCGCTTCTTGAGCCAAAAGATTG-CGCAGAAAGAGCCGGAGAAAAA 17365 Query 32780 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATG-TA 32838 ||||||||| ||||| ||||| || | || | |||| || | ||| || ||| | Sbjct 17366 AATTCCTTCGACTGCGGCAAACGCGACCAGACGCTCTGCAAAGGATGCG-TGCGATGAGA 17424 Query 32839 TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAA 32898 ||||| | |||||| |||||||| || || || || || || || ||||| | | Sbjct 17425 TCCACGTCAAAGCCCACTCGGCCTTTTTCTTCACGCAGGGAATCTCTTCCATAGCGTGGA 17484 Query 32899 AGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCA--AAAGACTATACAT 32956 |||||| ||| ||||| | || || || || ||||| | || || ||| | Sbjct 17485 AGAGATGGTTCTTTTCCTCTGGGTCGGACACGTACGTGTCAATGAGCAAGGA--GTACGT 17542 Query 32957 TTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAAT 33016 |||||| || ||||| || || || || || || || || ||||| | || || | || Sbjct 17543 TTCCGAGTGGATGTTCTCCATCGCGATCTGGAAGCCATAAAAGCAGCGCGCTTCCGGGAT 17602 Query 33017 CTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGC 33076 ||| || || | | || || || ||||| || || |||||||| || || Sbjct 17603 CTGGACGTCCTTCGAGAAGCGCTCGCACAAATTCTCCAGAACGATTCCGTCCGATGCGGC 17662 Query 33077 AAAAAACGCCAATACATGTTTTATAAA 33103 || || || | ||||| || || || Sbjct 17663 GAAGAAGGCGAGCACATGCTTGATGAA 17689 >seq1059 Length=17963 Score = 129 bits (142), Expect = 7e-25 Identities = 422/648 (65%), Gaps = 12/648 (2%) Strand=Plus/Plus Query 63052 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 63111 ||||| |||||| |||| |||||| ||||| || || || || |||| || || ||| Sbjct 16156 CCACTGTCCGTCCTCCTCCACTCGCTTCATGAACAGGTCCGGCGTCCACAGCGCGTAAAA 16215 Query 63112 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63171 ||||| | | | || || || || ||||| || ||||||||| | | Sbjct 16216 GAGATCACGCGCACGTGACTCTTCCTTGCCGTGGTTCTTGCGCAGGTCGAGGAACTCAAA 16275 Query 63172 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63231 ||| || | |||||||| || | ||| ||| | | || || || || || Sbjct 16276 AATGTCGGCGTGCCACGGCTCAATGTAGCAGGCAAACGCACCTTTGCGCTTACCACCGCC 16335 Query 63232 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 63291 |||||| | ||| | || |||| ||| || |||| || |||||| | ||| || || || Sbjct 16336 CTGATCCACGTAACGCGCTGTGTCATTGTACACTCGCAGCATTGGTACAATGCCGTTTGA 16395 Query 63292 TGTACCATTGGT-CCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGAC 63350 | ||||| || ||| || || ||||| ||||||| || || ||| || |||| Sbjct 16396 CGAGCCATTTGTGCCCCGA-ATGTAGCTCTTGGTGGCACGGATGTTCGAAATGGAGAGAC 16454 Query 63351 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCT 63410 | || || || || || || || | ||||| || || | ||||||||||||||| | Sbjct 16455 CGATGCCGCCGGCTGACTTGGAAATCACCGCGCAGCGCTTCAGCGTATCATAGATGCCTT 16514 Query 63411 CTATACTATCATCCATCATGTTAAGTAGAAAAC---AGCTAGACATTTGGTGACGACTAG 63467 | || || || ||||| | || ||||| | |||| || | || || | | Sbjct 16515 CGATCGAGTCTTCTTTCATGGTCAGCAGAAAGCACGAGCT-GAGCTGCGGGCGCGGC--G 16571 Query 63468 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGT 63527 | | ||||| || || || || || || || || || | |||| || | | | || Sbjct 16572 TGCTTGCATTGAACAAAGTCGGCGAGGCATGCGTGAAGAACTTTTGCGACAACATTTCGT 16631 Query 63528 ACGTCTCAATA--GCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63585 ||||||| | | ||| | | | ||| || || |||||||| || ||||| | Sbjct 16632 ACGTCTCGAGAACGCTCGGGATGTCGTGCAT--GTGGATGCCTACTGCCACGCGCATCAG 16689 Query 63586 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63645 ||||||||| |||| || || | || ||| || ||| | ||| || ||| | Sbjct 16690 CATGTGCTGCGGTCGCTCCACCACCTGTCCGTTCATGCGCAAAAGGTACGAACGTTCGAG 16749 Query 63646 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693 || || || ||||| |||| ||| | || || || |||||||| || Sbjct 16750 CGTCTTGAACCCAAAGTAGTCGTAGCAGAAATCGCGGTCGTAAATGAT 16797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633608127914400