Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_008296.2 Length=177300 Score E Sequences producing significant alignments: (Bits) Value seq250 601 4e-167 seq316 598 5e-166 >seq250 Length=47047 Score = 601 bits (666), Expect = 4e-167 Identities = 754/1032 (73%), Gaps = 2/1032 (0%) Strand=Plus/Plus Query 166045 TGGGAATCCTTCTGCGAATGGGTTACCTCTACCAACAACCGTCTTTATGTTGGTTGGTTT 166104 |||||| |||||| |||||||| || | |||||| | ||| | ||||||||| Sbjct 1231 TGGGAACGTTTCTGCTCTTGGGTTACAAGCACTGAAAACCGTTTATATATCGGTTGGTTT 1290 Query 166105 GGCACACTGATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCTTTCGT 166163 || | | |||||||| || | || |||| || ||||| |||||| | || ||||| Sbjct 1291 GGTGTATTAATGATTCCTACATTATTAACAGCTACT-TCTGTATTCATCATTGCATTCGT 1349 Query 166164 AGCGGCACCTCCTGTCGATATCGATGGGATCCGTGAGCCCGTAGCAGGCTCTCTAATGTA 166223 || || ||||| || ||||| ||||| |||||||| || || || || ||| || | || Sbjct 1350 TGCTGCTCCTCCAGTTGATATTGATGGTATCCGTGAACCAGTTGCTGGTTCTTTACTATA 1409 Query 166224 TGGTAACAACATCATCTCTGGTGCTGTTGTCCCCTCCTCCAACGCAATTGGTCTTCACTT 166283 ||||||||||| ||||||||||||||| | || || || |||||| ||||||| Sbjct 1410 CGGTAACAACATTATCTCTGGTGCTGTTATTCCAAGTTCTGCTGCTATTGGTATTCACTT 1469 Query 166284 CTATCCCATCTGGGAAGCAGCATCACTTGATGAATGGCTTTATAACGGTGGTCCTTTCCA 166343 ||| || || |||||||| || || | || || ||| | || |||||||| | || Sbjct 1470 CTACCCAATTTGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGGTGCTACCC 1529 Query 166344 GCTCGTAGTCTTCCACTTCCTCATCGGCATCTATGCCTACATGGGTCGTGAATGGGAATT 166403 || | || || ||||| | | || | | ||||||||||||||| |||||| | Sbjct 1530 TCTAATCGTATTACACTTTTTACTAGGTGTTGCTTGCTACATGGGTCGTGAGTGGGAACT 1589 Query 166404 GTCTTACCGCCTCGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCACCTGTTGCAGC 166463 ||||| | ||||||||||||||||| || |||| |||||| || |||||||| Sbjct 1590 TAGCTACCGTTTAGGTATGCGTCCTTGGATCGCTGTTGCATTCTCTGCTCCAGTTGCAGC 1649 Query 166464 AGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCC 166523 ||| | || || ||| || |||| || | |||||||| |||||||| | ||||| Sbjct 1650 TGCAACTGCTGTATTCTTGATCTACCCGATTGGTCAAGGCAGCTTCTCTGATGGTATGCC 1709 Query 166524 CCTGGGTATCAGTGGCACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCT 166583 | ||||| ||| || ||||||| |||| |||| |||||||| ||||| ||||| || Sbjct 1710 TTTAGGTATTTCTGGTACATTCAACTTCATGATTGTATTCCAAGCTGAGCATAACATTCT 1769 Query 166584 CATGCACCCCTTCCATATGCTGGGTGTAGCAGGTGTATTCGGTGGGTCACTTTTCTCGGC 166643 |||||||| ||||| | ||||| || |||||||| ||||| || || ||| || Sbjct 1770 AATGCACCCATTCCACCAATTAGGTGTTGCTGGTGTATTTGGTGGATCTCTATTCAGTGC 1829 Query 166644 AATGCACGGCAGTCTCGTTACTTCCTCGCTCGTCCGTGAGACCACTGAAACTGAGTCTCA 166703 |||||||| || || ||||| | ||||||| || ||||||| ||| ||| Sbjct 1830 TATGCACGGTTCACTAGTAACTTCTAGTTTAATCCGTGAAACAACTGAAAATGAATCTGC 1889 Query 166704 AAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTGGCTGCTCATGG 166763 ||||||||||||||||| |||||||||||||| || || ||||| || ||||| ||||| Sbjct 1890 TAACTATGGTTACAAGTTCGGTCAAGAAGAAGAAACTTATAACATTGTTGCTGCACATGG 1949 Query 166764 TTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCTCGCTCGCTGCACTT 166823 |||||| ||||| | || |||||||| ||| |||||||||||||| || || ||||| Sbjct 1950 TTACTTTGGTCGTTTAATATTCCAATATGCTAGTTTCAACAACTCTCGTTCACTTCACTT 2009 Query 166824 CTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTTACTGCTCTTGGTGTTAGCACCAT 166883 |||| | | |||||| ||||| ||||| ||||| || || | ||| || || Sbjct 2010 CTTCTTAGGTTTATGGCCAGTTGTAGGTATTTGGTTAACATCTATCTCTGTATCAACTAT 2069 Query 166884 GGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGT 166943 ||| || ||| | || ||||||||||||||||| || | | || | || |||||||| Sbjct 2070 GGCGTTTAACTTAAATGGTTTCAACTTCAACCAATCTGTAGTTGACAGCCAAGGTCGTGT 2129 Query 166944 GCTCAACACTTGGGCAGATGTCCTCAACCGTGCTGGTCTGGGTATGGAAGTAATGCACGA 167003 | ||||||||||| ||| || | ||||||||| | ||||||||||| ||||| || Sbjct 2130 AATTAACACTTGGGCTGATATCATTAACCGTGCTAACTTAGGTATGGAAGTTATGCATGA 2189 Query 167004 GCGTAATGCTCACAACTTCCCTCTGGATCTTGCTGCTGCTGAGTCCACTCCTGTGGCACT 167063 |||||| |||||||||||||| | || | || ||| ||| || ||||| ||| | Sbjct 2190 GCGTAACGCTCACAACTTCCCATTAGACTTAGCGTCTGGTGAATCTCTACCTGTTGCATT 2249 Query 167064 CACCGCACCTGC 167075 || || || || Sbjct 2250 AACAGCTCCAGC 2261 >seq316 Length=14323 Score = 598 bits (662), Expect = 5e-166 Identities = 758/1034 (73%), Gaps = 9/1034 (1%) Strand=Plus/Plus Query 167294 GGGTGGTTTGATGTCCTGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGG 167353 || ||||||||| | | ||||||||| | || | ||||| ||||| || | || ||| Sbjct 10149 GGATGGTTTGATCTTATAGATGACTGGTTGAAGAGAGACCGTTTTGTTTTCATAGGTTGG 10208 Query 167354 TCTGGATTACTTCTTTTTCCCACTGCT--TATCTGGCAATTGGTGGCTGGCTTACTGGCA 167411 ||||| ||| | || | || |||| ||||| || | ||||| |||||||| || | Sbjct 10209 TCTGGTTTATTGCTACTGCCT--TGCTCATATCTTGCCTTAGGTGGATGGCTTACAGGAA 10266 Query 167412 CGACGTTTGTTACGAGCTGGTATACCCACGGGTTGGCGTCTAGTTACCTTGAGGGTGCTA 167471 | || ||||| || |||||||| || || || || | ||| | || ||| || Sbjct 10267 CTACTTTTGTAACATCTTGGTATACTCATGGTTTAGCAAGTTCATACTTAGAAGGTTGTA 10326 Query 167472 ATTTTCTCACGGCAGCAGTGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTAC 167531 | || | || || ||||| |||||||| ||| | |||||| || ||| || || | | Sbjct 10327 ACTTCTTAACAGCTGCAGTTTCAACTCCAGCTAATAGTATGGGACACTCT-TTATTATTC 10385 Query 167532 TT-TGGGGTCCTGAGTCTCAGGGGGATTTCATCAGGTGGTGCCAGCTTGGGGGACTCTGG 167590 || ||||| || || |||| || ||||||| || ||||| ||| | || || || ||| Sbjct 10386 TTGTGGGGACCAGAAGCTCAAGGCGATTTCACAAGATGGTGTCAGATAGGTGGTCTTTGG 10445 Query 167591 GCTTTTGTGGCGCTCCACGGAGCCTTTGCTCTCATAGGATTTATGCTT-CGGCAATTTGA 167649 ||||| | || | || || || |||| || ||||| ||| || || || || ||||| Sbjct 10446 ACTTTTATAGCTTTACATGGCGCTTTTGGACTAATAGGTTTT-TGTTTACGTCAGTTTGA 10504 Query 167650 GATAAGTAGACTAGTAGGTATCCGTCCTTACAATGCGATTGCTTTTTCTGGTCCGATTGC 167709 ||| ||||| || ||| | | ||||| || || ||||||||||| || || || | Sbjct 10505 GATTGCAAGACTTGTGGGTTTGAGACCTTATAACGCTATTGCTTTTTCAGGACCTATATC 10564 Query 167710 TGTCTTTGTGTCTGTTTTTCTCATCTATCCTCTCGGACAGTCCAGTTGGTTCTTTGCACC 167769 ||| || || || || ||| | || |||||| | || || | |||||||| ||||| || Sbjct 10565 TGTGTTCGTATCAGTATTTTTAATGTATCCTTTAGGCCAAGCTAGTTGGTTTTTTGCTCC 10624 Query 167770 GTCGTTTGGTGTTGCAGCGATATTTAGATTCCTACTATTCCTACAGGGTTTCCATAACTG 167829 ||||||||||| || || |||||||| || ||||| |||||||||| |||||||| Sbjct 10625 TAGTTTTGGTGTTGCTGCCATCTTTAGATTTTTATTATTCTTACAGGGTTTTCATAACTG 10684 Query 167830 GACGCTCAACCCTTTCCATATGATGGGAGTTGCTGGTATCCTAGGCGGTGCATTGCTTTC 167889 |||| | || || |||||||||||||| || |||||||| || || ||||| || | | Sbjct 10685 GACGTTAAATCCATTCCATATGATGGGTGTAGCTGGTATTCTTGGTGGTGCCTTATTATG 10744 Query 167890 TGCAATCCATGGTGTTACAGTAGAGAATACTCTGTATGAAGATGGTGAGCAAGCAAACAC 167949 ||| |||||||||| ||| || || ||||| | | |||||||||||| || |||| Sbjct 10745 TGCTATCCATGGTGCTACTGTTGAAAATACCTTATTTGAAGATGGTGACGCTGCGGACAC 10804 Query 167950 TTTCAAAGCATTTGATACGACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCG 168009 || | ||| ||| | | ||||| || ||||| ||||| ||||| || || ||||| Sbjct 10805 ATTTAGAGCTTTTACTCCAACTCAATCTGAAGAAACATATTCAATGGTAACAGCAAACCG 10864 Query 168010 ATTCTGGTCTCAAATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGTTGCACTTCTTTAT 168069 || ||||| |||||||||||| ||||||| || || | ||| | || |||||||| Sbjct 10865 TTTTTGGTCACAAATTTTTGGTGTTGCTTTTTCTAACAAAAGATGGCTACATTTCTTTAT 10924 Query 168070 GCTTTTCGTTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATCGGTCTCGCACT 168129 | | || || || || | || | ||||||||||| ||||| || | || | ||| | Sbjct 10925 GTTGTTTGTACCAGTTACTGGTTTGTGGACAAGTTCAATTGGCATTGTAGGATTAGCATT 10984 Query 168130 TAATCTTCGTGCTTATGACTTTGTGTCTCAGGAAGTTAGAGCAGCAGAGGATCCAGAGTT 168189 ||| | | |||||||||||||| ||||||||| ||||||| ||||||||||| || || Sbjct 10985 AAATTTAAGAGCTTATGACTTTGTATCTCAGGAACTTAGAGCCGCAGAGGATCCTGAATT 11044 Query 168190 TGAAACTTTCTATACGAAAAACATCCTCCTCAATGAAGGACTCCGTGCCTGGATGGCTCC 168249 |||||| |||||||| ||||| || || | || ||||| | ||||| ||||||||| | Sbjct 11045 TGAAACATTCTATACTAAAAATATTCTATTGAACGAAGGTATTCGTGCATGGATGGCTGC 11104 Query 168250 AGTAGACCAACCACATGAAAACTTTGTATTCCCAGAAGAAGTATTGCCAAGAGGCAACGC 168309 | ||| || || |||||||||||| |||||||||| || || ||||| | || ||||| Sbjct 11105 ACAAGATCAGCCTCATGAAAACTTTATATTCCCAGAGGAGGTTCTGCCACGTGGAAACGC 11164 Query 168310 TCTGTGAT-ATAAT 168322 || | || ||||| Sbjct 11165 CCTTTAATAATAAT 11178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567210629534400