Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq963 170 2e-37 >seq963 Length=27641 Score = 170 bits (188), Expect = 2e-37 Identities = 392/577 (68%), Gaps = 15/577 (3%) Strand=Plus/Plus Query 93081 TGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGC 93140 |||||| | ||||||||||||| || | ||| |||||||| || |||| |||||||| Sbjct 17236 TGTACAAGAGGCACGCAAAGTCGCAGTGCAGACCCTCGTCTCGCGAAATCAGCTCATTGC 17295 Query 93141 TGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA-AAACTA 93199 |||| || | || || | || || || |||||||||||||| |||| ||| ||| Sbjct 17296 TGAACGTGAGTCCAGGCATGAGCCCGCGCTTCTTGAGCCAAAAGATTG-CGCAGAAAGAG 17354 Query 93200 CCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCG 93259 || || ||||| || ||||| || || ||||| || || | ||| || ||||| |||| Sbjct 17355 CCGGAGAAAAAAATTCCTTCGACTGCGGCAAACGCGACCAGACGCTCTGCAAAGGATGCG 17414 Query 93260 GAATTAC--TGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTG 93317 | | || |||||| | |||||||| ||||| |||||||| | || || | Sbjct 17415 ----TGCGATG-AGATCCACGTCAAAGCCCACTCGGCCTTTTTCTTCACGCAGGGAATCT 17469 Query 93318 TTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTA 93377 ||| ||||||| || || | | || || | || | ||| || || || | Sbjct 17470 CTTCCATAGCGTGGAAGAGATGGTTCTTTTCCTCTGGGTCGGACACGTACGTGTCAATGA 17529 Query 93378 ACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATC 93437 || || ||| |||| || |||| |||||||| || || ||||| || || || || | Sbjct 17530 GCAAGGAGTACGTTTCCGAGTGGATGTTCTCCATCGCGATCTGGAAGCCATAAAAGCAGC 17589 Query 93438 TAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATAC 93497 ||||||| |||||| || || | || || | ||| | ||| || || || | Sbjct 17590 GCGCTTCCGGGATCTGGACGTCCTTCGAGAAGCGCTCGCACAAATTCTCCAGAACGATTC 17649 Query 93498 CATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAA 93557 | || ||||| || || || || | | |||||| || || || | |||||| | || | Sbjct 17650 CGTCCGATGCGGCGAAGAAGGCGAGCACATGCTTGATGAAGTGCTGCTCATCCTTGTTGA 17709 Query 93558 GCTTATC-CCAAT-CGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGA 93615 || ||| ||| | | | || || || |||| ||| ||| | ||||| || || Sbjct 17710 GC-GATCGCCACTGCAGCAAG-TCCGAGCTCAGGTCGATTTCCTCGGCGGTCCAGAAGGA 17767 Query 93616 TGCTTC-TGCTTTTTTGTACATATCCCATATGTCTTG 93651 || || ||| || |||||||| | ||| ||||| || Sbjct 17768 CGCCTCGTGC-TTCTTGTACATTTTCCAGATGTCGTG 17803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556839820269360