Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq1059 118 9e-22 seq1200 116 3e-21 seq970 86.0 5e-12 >seq1059 Length=17963 Score = 118 bits (130), Expect = 9e-22 Identities = 274/404 (68%), Gaps = 13/404 (3%) Strand=Plus/Plus Query 129997 CTCCACATTCCATCCGCTTCGACTCGTTTCATAAACAAATCGGGTACCCACAGGGCGTAC 130056 |||||| ||| ||| | || ||||| ||||| |||| || || |||||| ||||| Sbjct 16154 CTCCACTGTCCGTCCTCCTCCACTCGCTTCATGAACAGGTCCGGCGTCCACAGCGCGTAA 16213 Query 130057 AACAAATCTCGCGCTTTT--CTAT-CCTCGGCACCCATGTTACGTTTCAGTTCAAGGAAA 130113 || | ||| ||||| | || | ||| | | | || || ||| || ||||| Sbjct 16214 AAGAGATCACGCGCACGTGACTCTTCCTTGCCGTGGTTCTTGCG---CAGGTCGAGGAAC 16270 Query 130114 TCGTAAATGTCGGCGTGCCACGGTTCAACATAAATTGCCATTGCGCCCTTCCGTTT---G 130170 || ||||||||||||||||||| |||| || || | || || || || || Sbjct 16271 TCAAAAATGTCGGCGTGCCACGGCTCAATGTAGCAGGCAAACGCACCTTTGCGCTTACCA 16330 Query 130171 CCCCCTTGGTCAACGTGGCGCACGGCATTGTTGTAGACTCGCAACATTGCCTCCAAT-CC 130229 || || || || |||| ||| | | | ||||| ||||||| ||||| | |||| || Sbjct 16331 CCGCCCTGATCCACGTAACGCGCTGTGTCATTGTACACTCGCAGCATTG-GTACAATGCC 16389 Query 130230 GTTGGCCGTGCCGTTTGTGCTCTCAATGAAACTGCCACGAGCCCGAACGTTATGAACGCT 130289 ||| | || ||| ||||||| | |||| | || || || | ||| || | Sbjct 16390 GTTTGACGAGCCATTTGTGCCCCGAATGTAGCTCTTGGTGGCACGGATGTTCGAAATGGA 16449 Query 130290 TAGACCTATGCCGCCGCCAAATTTTGATATCAACGCGCAATCGCGT-AGCGTTTCATAAA 130348 ||||| ||||||||| | | || || |||| ||||| | ||| | ||||| ||||| | Sbjct 16450 GAGACCGATGCCGCCGGCTGACTTGGAAATCACCGCGC-AGCGCTTCAGCGTATCATAGA 16508 Query 130349 TGCCAACGATACTGTCTTCTTTAATGTTTAGGAGGAAACACGAG 130392 |||| |||| ||||||||| ||| | || || || |||||| Sbjct 16509 TGCCTTCGATCGAGTCTTCTTTCATGGTCAGCAGAAAGCACGAG 16552 >seq1200 Length=24482 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | || || || ||| |||| || || ||||| || | Sbjct 18895 ATGCAGATCTTTGTGAAGACGCTGACGGGCAAGACGATCACGCTCGAGGTGGAGTCCTCG 18836 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | |||| || ||||| ||||||||||| || || || ||||| Sbjct 18835 GACACGATCGACAACGTCAAGGCGAAGATTCAGGACAAGGAGGGCATCCCGCCAGATCAG 18776 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || || || || || ||| ||||||| ||||| |||| || |||||| Sbjct 18775 CAGCGCTTGATCTTCGCGGGGAAGCAGCTAGAGGACGGGCGCACGCTCTCGGACTACAAC 18716 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || || |||||| | || || || |||| |||||||||| Sbjct 18715 ATTCAGAAGGAGTCCACCCTCCACTTGGTGCTGCGCCTGCGCGGAGG 18669 >seq970 Length=23808 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| ||||| || || || | || || || || |||| | || || || || Sbjct 22735 AACATGCAGATTTTCGTCAAGACCCTCACGGGCAAGACAATCACGTTGGAGGTCGAGTCC 22676 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || ||| | || || |||| || |||||||||||||| || || || || || Sbjct 22675 TCGGACACCATCGATAATGTCAAGGCGAAGATTCAAGACAAGGAAGGCATCCCGCCAGAC 22616 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || || | || ||||| ||||| ||| | ||||| || || | || || || Sbjct 22615 CAGCAGCGCTTGATTTTTGCGGGCAAGCAGCTGGAGGACGGACGAACACTGTCAGACTAT 22556 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || || || || ||| | || || ||| |||| ||||||| || Sbjct 22555 AACATCCAGAAGGAGTCGACCTTGCACTTGGTTCTGCGTCTGCGCGGTGG 22506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419712582078910