Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq970 185 2e-41 seq204 125 1e-23 seq147 118 2e-21 seq2016 107 4e-18 seq1059 86.0 1e-11 >seq970 Length=23808 Score = 185 bits (204), Expect = 2e-41 Identities = 177/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| || |||| |||||||| | || ||||| || ||||||||||| || || Sbjct 22506 CCACCGCGCAGACGCAGAACCAAGTGCAAGGTCGACTCCTTCTGGATGTTATAGTCTGAC 22565 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 ||||| | || || || | |||||| || || || || | | || ||||| || || Sbjct 22566 AGTGTTCGTCCGTCCTCCAGCTGCTTGCCCGCAAAAATCAAGCGCTGCTGGTCTGGCGGG 22625 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||||||||||||||||||||| |||||||| ||||||||||| | || || || Sbjct 22626 ATGCCTTCCTTGTCTTGAATCTTCGCCTTGACATTATCGATGGTGTCCGAGGACTCGACC 22685 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| ||||| || || |||||||||||||||||||| |||||||| Sbjct 22686 TCCAACGTGATTGTCTTGCCCGTGAGGGTCTTGACGAAAATCTGCAT 22732 >seq204 Length=47038 Score = 125 bits (138), Expect = 1e-23 Identities = 391/592 (66%), Gaps = 30/592 (5%) Strand=Plus/Plus Query 172887 TCCTTGTCACCGGTGGAGCAGGCTTCATCGGCTCGCACGTCGTCATGAAA--CTCGTTCA 172944 |||| |||| ||||| || ||||| ||||| |||||||| | ||| ||||| || Sbjct 41195 TCCTGCTCACGGGTGGCGCTGGCTTTATCGGATCGCACGTGGCG--GAACGCCTCGTGCA 41252 Query 172945 GAGGTACCCCGAGTGCAAGGTGGTGGTGCTCGACAAGATGGACTACTGCG-CGACCCTGA 173003 ||||| || |||| || | ||||| | |||| | | |||||||| | || || || Sbjct 41253 CAGGTATCCGGAGTATAAAATCGTGGTATTAGACAGGCTCGACTACTGTGGCGCGCCAGA 41312 Query 173004 ACAACCTGGCAACAGTTCGAGA--TGCTCCCAATTTCAAGTTCGTCAAGGGAGATATTCA 173061 | | || | || | ||| |||||| | ||| || ||||| || || |||| Sbjct 41313 AAA--CTTACGGGAGCTGGAGCAGTGCTCCAACTTTAAA-TTCGTGCGCGGCGACATTCG 41369 Query 173062 ATCTACTGATCTCCTGGCGCACGTCCTGAAGCAGGAAAAAATTGACACGATTATGCACTT 173121 || | || || | || | ||| ||| | ||||||||| | |||||||| Sbjct 41370 CTCCAAGTCGCTGCTCGACTACTTGCTGCGCGCGGAGCAGATTGACACGGTCATGCACTT 41429 Query 173122 TGCTGCGCAGACCCATGTGGACAACTCGTTCGGTAACTCGCTGGCATTTACCATGAACAA 173181 ||| ||| ||| || || |||||||||||| ||| | | || || ||||| Sbjct 41430 TGCCGCGTCGACGCACGTCGACAACTCGTTCCAGTCCTCAATCTCGTTCACATCCAACAA 41489 Query 173182 CGTCTACGGGACCCACGTTCTCCTGGAATGCGCGAGGCTCTATGGCGGTGTCCAGCGGTT 173241 || || || || || || |||||||||||| | || ||| | ||||||| || Sbjct 41490 TGTGCTTGGCACACATGTGCTGCTGGAATGCGCGCGCGAGTACGGCCGCATCCAGCGTTT 41549 Query 173242 CATCAATGTGTCTACCGACGAAGTATAC---GGCGAGAGCAGTCTGGGCAAAAAAGAAGG 173298 ||| ||||||| || |||||||| ||| ||||||| | || | || | | ||| Sbjct 41550 CATGCATGTGTCGACAGACGAAGTGTACGGTGGCGAGACCGACATGCGTAACACTG-AGG 41608 Query 173299 CCTCGATGAACACTCGTCCCTCGAGCCAACAAACCCATATGC-AGCAGCCAAGGCTGGTG 173357 || ||| |||| || || ||||| ||||| ||| | ||||||| | Sbjct 41609 AGTCCATG-----------CTCGCTCCGACTAACCCGTATGCGTGCA-CAAAGGCTGCGG 41656 Query 173358 CCGAAATGATGGCACGTGCATA-TCACACATCGTACAAGCTACCAGTCATCGTGACGCGC 173416 | || | || || ||||| ||| | ||||||| |||||| | | ||||||| Sbjct 41657 CTGAGTTTATCTGTCGCGCATACTCA-ATATCGTACGGGCTACCCATTGTGATGACGCGT 41715 Query 173417 GGCAACAATGTGTATGGCCCGCATCAGTTCCCCGAAAAAATGATC-CCAAAA 173467 || |||||||| ||||| ||| |||| ||| || || ||||| |||||| Sbjct 41716 GGAAACAATGTCTATGGGCCGAGGCAGTACCCGGACAAGTTGATCGCCAAAA 41767 >seq147 Length=5172 Score = 118 bits (130), Expect = 2e-21 Identities = 152/206 (74%), Gaps = 8/206 (4%) Strand=Plus/Plus Query 224978 TACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAA 225037 |||||||||||||||||||||||||| ||| |||| || || ||||||| || ||||| Sbjct 3007 TACCGCCACTGGATGTACTGGTTGGGCGTCTTGTCAAGATGCATCTCAATGTGATGGAAC 3066 Query 225038 GCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTC 225097 || ||||| || || || || | || ||| ||||||||||||||| || | || Sbjct 3067 GCGTGCTGTGCGACATATGCGACACGTGCGTTCGGATGCTTCCACACATTACC---AATC 3123 Query 225098 ---GGTTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGG 225154 |||| |||| || || || | |||||||| ||| | || ||||| || || || Sbjct 3124 TGGGGTTCAACCTCTCCCGTCAGTAGCTTGATGATCGTCGATTTACCCGCTCCGTTCGGA 3183 Query 225155 CCAAT-CACGCCAATCCGGGATGACA 225179 ||||| |||| ||| || || |||| Sbjct 3184 CCAATGCACG-CAACGCGCGACGACA 3208 Score = 89.7 bits (98), Expect = 9e-13 Identities = 154/224 (69%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 224438 AATTCAGTGCTGTGAGAAATAACTACTACACCGCCGCCGAATGACTCAAGGGCGGATGAA 224497 || ||| || |||| || || || || |||||||| |||| |||| | || | Sbjct 2413 AACTCACTGTTGTGTGAGATCACAACCACACCGCCCTCGAAAGACTTGATCGCTTCGGCC 2472 Query 224498 AGCGCGCCAAGCGACTCGCGGTCAAGGAAGTTCGTCGGCTCATCCAGGATGATAACGTGG 224557 ||||||||||| |||||||| || | | ||||||| ||||||||||| || | || ||| Sbjct 2473 AGCGCGCCAAGAGACTCGCGATCCAAGTAGTTCGTGGGCTCATCCAGAATCACAATGTGC 2532 Query 224558 GGGCACTGCCACAGGGCTGCACCAACCACCAGCTTCACCTTCTGACCGCCAGAGAGGCCG 224617 || | ||||| ||| || | | ||| | ||||| ||||| || ||| ||| | Sbjct 2533 GGATGATTCCACATGGCAGCGGCCAGCACAACTTTCACTTTCTGGCCACCACTGAGCTGG 2592 Query 224618 CGGATCCGCGAGTGAGTCGTGAATTCGGGGTCAAGACCAATCTT 224661 | || || | ||||| | |||| ||| || ||||| || Sbjct 2593 CCAATGCGGCAATGAGTGCCGTATTCCTTGTCCAGGCCAATGTT 2636 >seq2016 Length=8234 Score = 107 bits (118), Expect = 4e-18 Identities = 259/387 (67%), Gaps = 4/387 (1%) Strand=Plus/Minus Query 176146 ATTCCGGTTCAATCCGGTCGCCGTCATCCTCGAGGTAGTTCAGCAGACGCTCGTCGGCCT 176205 ||| ||| ||||| || ||| || || |||||||| | ||| | | ||||| | Sbjct 5526 ATTTCGGCTCAATGCGCATGCCATCTTCGTCGAGGTACTCCAGAATTTGGTCGTCCTT-T 5468 Query 176206 TGTGGAAA-ATATCCCGGGTGTTGGGGGACAGTTGTGTGAAGATATACCTAGCAGACGCA 176264 | |||||| | | | || ||| || || | |||| || || || | || ||||| Sbjct 5467 TCTGGAAACAAAGCACGCGTGACCTTGGCCAATCGTGTAAAAATGTAACGCGCCGACGCT 5408 Query 176265 CTGTCCTTGCCTCCGTGAAGGCGGGAACCGAATTGTCCGCGAGGAAGAAGCAAATTGATG 176324 ||| || ||||| || || |||| |||||||| || || | |||||| || ||| Sbjct 5407 GCGTCTTTACCTCCTTGCAGCCGGGTTCCGAATTGACCAGACGGCACAAGCAAGTTAATG 5348 Query 176325 TTATTCGAACCCACGTAGTCTTGGGCCATTCCGACTATGG-CGCCCTGGAGAGACGCCTC 176383 || || | ||| || ||| || || | ||||| || | || | || || || ||||| Sbjct 5347 TTGTTGGCACCGACAAAGTTCTGCGCAAGCCCGACGATCGTCGACATG-AGTGAAGCCTC 5289 Query 176384 GCCGTGGTGATAGCCGGCGTTCTCACTTGTGTATCCGGCAAACTGCGCGACTTTGATTTC 176443 |||||| ||||| | || | ||| || ||||| | |||||| || || ||||| Sbjct 5288 GCCGTGATGATAAGCCGCATGCTCCGACACATAACCGGCGAGCTGCGCCACCTTAATTTC 5229 Query 176444 TTGTACGAGGTTGCGCTTCAACGCCGAGAACAGAATCTTCCGCTGCGAGGGCTTCAGACC 176503 ||| || | ||| || || ||| || | ||| ||||| |||||| || || Sbjct 5228 AGTCTTGAGTTTTCTCTTGAAGCACGCGAAGAGCACCTTGCGCTGGCTGGGCTTTAGCCC 5169 Query 176504 ATCGACGACCGACGGAATGGAACGCTC 176530 |||||| || |||||||| ||||| Sbjct 5168 ATCGACAACGCTAGGAATGGAGCGCTC 5142 >seq1059 Length=17963 Score = 86.0 bits (94), Expect = 1e-11 Identities = 171/248 (69%), Gaps = 4/248 (2%) Strand=Plus/Plus Query 31350 GACGCGGGAGACCCCTCAAAGGTAGGATGGGGACCGTGCTCTTCCGCGAGTTCGCAAGAG 31409 || |||||||| || |||| || || | ||||||||||| ||| || || || Sbjct 15482 GATGCGGGAGAGCCAGCAAATGTTTCATACGAACCGTGCTCTTGCGCCAGCTCCATTGAA 15541 Query 31410 GCCTCCACCGCTGCAAAGTAAATATTCTCAAAGATTTCCCGGTTGAGGTTCTTG-GCCGC 31468 ||||| ||| ||||||||||| |||| ||||| || || |||| | ||||| ||| | Sbjct 15542 GCCTCACACGCAGCAAAGTAAATCGTCTCGAAGATATCACGATTGA-GCTCTTGTGCCTC 15600 Query 31469 GTCAGAGTCAAAAGGCATGCGCAGCTTGAAGAACACGTCCTGAAGACCCTGGACACCCAC 31528 || || || || | ||||| || ||| ||| || ||||| || || | Sbjct 15601 GTGGCTCTCGAATGGGAGGCGCATGAGGATAAACGTGTCAGCTAGCCCCTGAACCCCAAG 15660 Query 31529 TCCAATTGGGCGCCGGCGCATGTTACTAG-TCTTCGCCTCGGGAATTGCGTAGGACATGA 31587 ||||| ||||| |||||||||| | || |||||||||| | | |||| | ||| Sbjct 15661 CCCAATCGGGCGATGGCGCATGTT-CGAGTTCTTCGCCTCCTCCACAGGGTAGTAATTGA 15719 Query 31588 CGTCAATG 31595 | |||||| Sbjct 15720 CATCAATG 15727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921587677876080