Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq963 205 2e-47 seq1059 199 7e-46 >seq963 Length=27641 Score = 205 bits (226), Expect = 2e-47 Identities = 579/872 (66%), Gaps = 28/872 (3%) Strand=Plus/Minus Query 42284 GATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGC 42343 |||| |||||| ||||||||| |||||||||||| || ||| ||||||||| Sbjct 17813 GATCAGGCACCACGACATCTGGAAAATGTACAAGAAGCACGAGGCGTCCTTCTGGACCGC 17754 Query 42344 CGAGGAGATTGACCTGGCCAAGGACACGGCCGGCTG-GGAG-TCACTGTCTGAGAACGAA 42401 |||||| || |||||| | |||| | | || | || | || || || | || Sbjct 17753 CGAGGAAATCGACCTGAGCTCGGACTTG--CTGCAGTGGCGATCGCTCAACAAGGATGAG 17696 Query 42402 AAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAG 42461 || ||| |||| | | || |||||||||||||| || ||||| || || ||| Sbjct 17695 CAGCACTTCATCAAGCATGTGCTCGCCTTCTTCGCCGCATCGGACGGAATCGTTCTGGAG 17636 Query 42462 AACCTG-GCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGG 42520 || || || | | | ||| ||| || || ||| | || ||||||||||| || || Sbjct 17635 AATTTGTGCGAGC-GCTTCTCGAAGGACGTCCAGATCCCGGAAGCGCGCTGCTTTTATGG 17577 Query 42521 CTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACAC 42577 ||||||||| || || |||||| | ||||| || |||| || |||||| |||| Sbjct 17576 CTTCCAGATCGCGATGGAGAACATCCACTCGGAAACGTACTCC---TTGCTCATTGACAC 17520 Query 42578 GTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTG 42637 |||| | || || | || ||| || ||| | || ||||| ||| ||||| Sbjct 17519 GTACGTGTCCGACCCAGAGGAAAAGAACCATCTCTTCCACGCTATGGAAGAGATTCCCTG 17460 Query 42638 CATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGG 42697 | | ||||| ||||| || ||||| | | |||||| || | ||||| | || | Sbjct 17459 CGTGAAGAAAAAGGCCGAGTGGGCTTTGACGTGGATC--TCATCGC-ACGCATCCTTTGC 17403 Query 42698 CGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTC 42757 ||| | ||||| || ||| |||| ||||| || || || ||||| ||| | ||| | | Sbjct 17402 AGAGCGTCTGGTCGCGTTTGCCGCAGTCGAAGGAATTTTTTTCTCCGGCTCTTTCTGCGC 17343 Query 42758 CATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCAT 42817 ||||| ||||||||| || | | ||||| |||||||| ||| || || || || Sbjct 17342 AATCTTTTGGCTCAAGAAGCGCGGGCTCATGCCTGGACTCACGTTCAGCAATGAGCTGAT 17283 Query 42818 CAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAG 42877 | |||||||| ||||| | |||||||| |||||| ||| | ||| | Sbjct 17282 TTCGCGAGACGAGGGTCTGCACTGCGACTTTGCGTGCCTCTTGTAC---AGCATGTGCCC 17226 Query 42878 GCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAA 42937 ||| |||| |||| || ||| | |||||||||| || || | | |||||| Sbjct 17225 GCAGAAGCTGCCGAACGAAACGGTGCTCAACATCATCACGAGCGCTGTTGCGTGCGAGAA 17166 Query 42938 GGAGTTCCTCACGCAGTCGCTGCCCGTG-TCCCTGGTCGGCATGAACCACGACCTCAT-G 42995 ||| || | | | ||||| ||||| | || |||| |||||| ||| || || | Sbjct 17165 GGAATTTATTATTGACGCGCTG-CCGTGCGACTTGATCGGGATGAACAGCGAACTTATGG 17107 Query 42996 TGCAAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAG---ATGGGTCTCAGCCGC 43052 |||| || || ||| ||||||||| | |||| |||| | || | | Sbjct 17106 CGCAA-TATATTGAGTTTGTCGCCGAC---CGCCTGCTCCAGTCCCTCGGGCACGAAAAA 17051 Query 43053 CTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACC 43112 | ||| || | | ||| || |||| |||||| || ||| | || || |||||| Sbjct 17050 GTTTACCACGCCCGCAACCCGTTTGACTGGATGGAGCTGATTTCGCTCGAAGGGAAGACC 16991 Query 43113 AACTTTTTCGAGAAGCGCGTCGCCGACTACCA 43144 |||||||| |||||||| || | || ||||| Sbjct 16990 AACTTTTTTGAGAAGCGTGTGGGAGAGTACCA 16959 >seq1059 Length=17963 Score = 199 bits (220), Expect = 7e-46 Identities = 674/1032 (65%), Gaps = 32/1032 (3%) Strand=Plus/Plus Query 244688 GCCAGGTTGCAGACGGCCACCTCCTCCGAGTTG--GTGTACTGGACAATCTCGGTGCAGA 244745 |||| |||||| ||||||||||| || || || ||||||| | || || ||||| | Sbjct 15860 GCCAAGTTGCACACGGCCACCTCGTC--AGGTGCTGTGTACTCAATGATTTCTGTGCACA 15917 Query 244746 GGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCT 244805 || |||| ||| ||||| |||| ||| || || ||||| | |||| ||| |||| Sbjct 15918 AATTGCTGCTGCGGATTGTGCCGAGGTTCTGCTGGTTCGACTTTGAGTTGGCGGCATCCT 15977 Query 244806 TGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGT 244865 |||| |||||| | || |||||||| | ||| | | | || || ||| || | Sbjct 15978 TGTACAGCATGTACGGTGTGCCGGTCTCAATCTGCGAGTCAAGCACCGCAAACCACAGTT 16037 Query 244866 CCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCT 244925 | ||| | |||| ||| || ||| || ||||| ||||||||| |||| Sbjct 16038 TGCGCGCCGGAATCGTCTCGCGCGCGCGGCCTTCGTTTTCGTACTTGGTGTACAGCGCCT 16097 Query 244926 CGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACG-CCGGGCACATGAGACTC 244984 |||| || || ||||| ||| || || ||| | || ||||| | ||| ||| Sbjct 16098 CGAAGTCCGGACCCCACGTGTCGCACAGTCC-CGGCGCTTCGTTGGGGCAGAAGAGGCTC 16156 Query 244985 CACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAG 245044 |||| ||| | |||| || | || |||||| ||||| || |||| || || | ||| Sbjct 16157 CACTGTCCGTCCTCCTCCACTCGCTTCATGAACAGGTCCGGCGTCCACAGCGCGTAAAAG 16216 Query 245045 AGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAG 245104 || || | | | ||| ||| ||| |||||| | ||| || | || ||||| Sbjct 16217 AGATCACGCGCACGTGACTCTTCCTTGCCGTGGTTCTTGCGCAGGTCGAGGAACTCAAAA 16276 Query 245105 ACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCC 245164 | |||| ||||||| ||||| |||||| || | || || ||||| || ||| Sbjct 16277 ATGTCGGCGTGCCACGGCTCAATGTAGCAGGCAAACGCACCTTTGCGCTTACCACCGCCC 16336 Query 245165 TGGTCCACCATCCTCTCGAGCGCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAG 245224 || ||||| | | | | ||| | | ||||| | || || |||||||| || Sbjct 16337 TGATCCACGTAACGCGCTGTGTCATTGTACACTCGCAGCATTGGTACAATGCCGTTTGAC 16396 Query 245225 TGGCCGTTGGTGCCCTTGATGTAGGCGCCCT---TGCCCCTGAGGTTGCTGATGGACATG 245281 ||| || |||||| ||||| || || || | | || ||| ||||| | Sbjct 16397 GAGCCATTTGTGCCCCGAATGTA---GCTCTTGGTGGCACGGATGTTCGAAATGGAGAGA 16453 Query 245282 CCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCC 245341 || | |||||||| |||||| || | ||||||| ||| | || || ||||| Sbjct 16454 CCGATGCCGCCGGCTGACTTGGAAATCACCGCGCAGCGCTTCAGCGTATCATAGATGCCT 16513 Query 245342 TCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTG-GGGCTTGGGGCT 245400 || || ||| |||||| | ||||||||||| ||| ||||| |||| || | | Sbjct 16514 TCGATCGAGTCTTCTTTCATGGTCAGCAGAAAGCACGAGCTGAGCTGCGGGCGCGGCG-T 16572 Query 245401 GCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGAGAGGAACCCGTA 245460 || | ||||||| ||| || ||| || || ||| | ||| | | |||| Sbjct 16573 GCTTGCATTGAACAAAGTCGGCGAGGCATGCGTGAAGAACTTTTGCGACAACATTTCGTA 16632 Query 245461 CGTCTGGAGCA-GAGCGTCGATGTTGTCGCCGTGGATCTGCAGGGCGCAC-CTCATGAGG 245518 ||||| ||| | | || ||||| || |||||| | || ||| | ||| || Sbjct 16633 CGTCTCGAGAACGCTCG-GGATGTCGTGCATGTGGATGCCTACTGC-CACGCGCATCAGC 16690 Query 245519 GTGTGCTGGGGCGTCTCGATGGGTCCCTCGGGTCCCTTGA-GC-----ATGTAGGAGCGC 245572 ||||||| || ||| | || | |||| || | || | ||| || || Sbjct 16691 ATGTGCTGCGGTCGCTCCA------CCACCTGTCCGTTCATGCGCAAAAGGTACGAACGT 16744 Query 245573 TCGAGCGTCTTGAACCCAAAGTACGAGTAGCCAAAGTCGGCGTGGTGCCTGACGGCTGCG 245632 ||||||||||||||||||||||| ||||| || ||| || || ||| || || Sbjct 16745 TCGAGCGTCTTGAACCCAAAGTAGTCGTAGCAGAAATCGCGGTCGTAAATGATCGCCGCA 16804 Query 245633 TCGAGTCTCTCGGCGTGCTTCTGACTGACCTCGTAAAACTTTTGCGCT-ATGAGGGGAGC 245691 ||||| ||||||||||||||||| |||| |||| | | | | || ||||| ||||| Sbjct 16805 TCGAGCGTCTCGGCGTGCTTCTGAATGACATCGT-ACGCGTCGTCACTGATGAGCGGAGC 16863 Query 245692 CCTGAGCCCGGT 245703 | | ||||||| Sbjct 16864 CTTCTGCCCGGT 16875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944303622020640