Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq148 120 3e-22 >seq148 Length=44851 Score = 120 bits (132), Expect = 3e-22 Identities = 404/627 (64%), Gaps = 4/627 (1%) Strand=Plus/Plus Query 20135 GGAAAGGGACGTGGAGTGCGCGTCAGCTGCAGCCGTAGTGGCTCTATATGCGTTTTGTAG 20194 ||||||| || || ||| ||||||| || || | || || || | ||||| Sbjct 22135 GGAAAGGCGCGAGGCTGACGCTCCAGCTGCTGCAAAAGCGCATCGATGTGGTTGTTGTAC 22194 Query 20195 ATGTGGGCATCTCCCAACGTGTGAATAAACTCCCCGGGTCTAAGACCAGTAACATGAGCA 20254 | ||| || || |||||| || | |||||| || ||| ||| || || ||| || Sbjct 22195 ACGTGCGCGTCGCCCAACACATGCACAAACTCTCCCGGTTGAAGGCCGACAATATGCGCC 22254 Query 20255 AGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATGTCT 20314 | ||| || | || | ||||||||||||||| ||||| || |||||||||||||| Sbjct 22255 ACCATGATGGTCAGCAGCGCATAGCTGGCAATGTTGAAAGGCACACCCAAACCCATGTCG 22314 Query 20315 CCCGACCTCTGATACAGCTGACAGGAAAGCTCACC---GTCAGCTACATAAAATTGACAT 20371 | || | ||| |||| ||| || || ||||| || | || || |||||||| Sbjct 22315 CAAGAGCGCTGGTACATCTGGCACGACAGCTCGCCGCTGGCATTCACGTAAAATTGGGCG 22374 Query 20372 AACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCACACATA 20431 |||| ||| || || || | ||||| ||| | | ||||| |||||||||| ||| Sbjct 22375 AACATGTGGCACGGTGGCAAGGCCATTTGCGATAGCGCGGCCGGATTCCACGCACTCATG 22434 Query 20432 ATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAATGTACGACAATTGGTCA 20491 | || | | || | ||| || | | ||| | | | || || || Sbjct 22435 ACCATGCGGCGGTCATTCGGGTTTGTGCGCAGCGTATCAATCACACCCTGCAGCTGATCC 22494 Query 20492 AACCCCTGGCCTGTATAGTCAGCATCCGCGTCCACGTACGCCGCCCCAAAGTGCCTCCAC 20551 | || || || | ||||| || | | || | ||| | || |||||||| | |||| Sbjct 22495 ACGCCTTGCCCGGCGTAGTCGGCGTGCTTGTTCGAGTATGTTGCGCCAAAGTGGCGCCAC 22554 Query 20552 TGGAAACCGTAAACAGGTCCCAAATCCCCCTCCCTTCTGTGCGCCAGGCCGCGCCCGGCC 20611 || || || || || || |||| || ||| | | | | ||| ||| | | || Sbjct 22555 TGAAAGCCATAGACCGGACCCAGGTCGCCCGGCTCACGCTCAGTCAGACCGAGACTATCC 22614 Query 20612 AGGAACTCCCTGGAGCCATTTTTGTCCCATATCTTGACTCCTGTTCTTGAAAGCTCCCTG 20671 || ||||| | ||||| || |||||| || | || || | | || || Sbjct 22615 AGAAACTCGCGCGAGCCGTTCCCGTCCCAAATGTGGATACCGCGTGCCGCGAGTAGGTTG 22674 Query 20672 GAGTCAGTACTCCCCTTCAGAAACCAAAGCAGCTCTTGCACTACGCCTCGCCAAAACACC 20731 | ||| || || || || |||||| |||| || | | | ||||| ||||| ||||| Sbjct 22675 GCGTCCGTGCTGCCGCGCACAAACCACAGCATTTCCTCCGCGACGCCGCGCCAGAACACG 22734 Query 20732 CGCTTTGTGGTTAGTA-AGGGAAAGTG 20757 ||||||||||| || | ||||||||| Sbjct 22735 CGCTTTGTGGTGAGCAGCGGGAAAGTG 22761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441356171279760