Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq1200 129 1e-24 seq2751 96.9 8e-15 seq970 95.1 3e-14 seq2016 91.5 3e-13 >seq1200 Length=24482 Score = 129 bits (142), Expect = 1e-24 Identities = 148/198 (75%), Gaps = 6/198 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || || ||||| | ||||||||| ||||| |||| || || || |||||| Sbjct 18705 TCCTTCTGAATGTTGTAGTCCGAGAGCGTGCGCCCGTCCTCTAGCTGCTTCCCCGCGAAG 18764 Query 288343 ATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| ||||| ||| ||||| ||| || || || ||||| || ||||| || ||| Sbjct 18765 ATCAAGCGCTGCTGA---TCTGGCGGGATGCCCTCCTTGTCCTGAATCTTCGCCTTGACG 18821 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | || || || || ||||||||||||||||| || ||||| ||||| Sbjct 18822 TTGTCGATCGTGTCCGAGGACTCCACCTCGAGCGTGATCGTCTTGCCCGTCAGCGTCTTC 18881 Query 288460 ACGAATATCTGCATTATG 288477 || || |||||||| ||| Sbjct 18882 ACAAAGATCTGCATGATG 18899 >seq2751 Length=18403 Score = 96.9 bits (106), Expect = 8e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 288328 TGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATT 288387 || ||||| ||||| ||||| ||||| || ||||| || || || ||||| || Sbjct 18402 TGCTTTCCGGCGAAAATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGAATC 18343 Query 288388 TTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCG 288447 || || ||||| || || || | ||| ||| || || ||||||||||| ||||| ||| Sbjct 18342 TTGGCCTTCACATTATCAATCGTGTCGGACGACTCCACCTCGAGCGTGATGGTCTTTCCG 18283 Query 288448 GTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| || || |||||||| Sbjct 18282 GTCAGCGTCTTCACAAAAATCTGCAT 18257 >seq970 Length=23808 Score = 95.1 bits (104), Expect = 3e-14 Identities = 138/194 (71%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| |||||||| | || || |||||||| || | || || || || || Sbjct 22542 TCCTTCTGGATGTTATAGTCTGACAGTGTTCGTCCGTCCTCCAGCTGCTTGCCCGCAAAA 22601 Query 288343 ATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| ||||| || ||||| ||| ||||| || || || || ||||| || || Sbjct 22602 ATCAAGCGCTGCTGG---TCTGGCGGGATGCCTTCCTTGTCTTGAATCTTCGCCTTGACA 22658 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | || || || || || | |||||| ||||| || || || |||||| Sbjct 22659 TTATCGATGGTGTCCGAGGACTCGACCTCCAACGTGATTGTCTTGCCCGTGAGGGTCTTG 22718 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 22719 ACGAAAATCTGCAT 22732 >seq2016 Length=8234 Score = 91.5 bits (100), Expect = 3e-13 Identities = 163/233 (70%), Gaps = 14/233 (6%) Strand=Plus/Minus Query 326204 GCATCGCGGACGTTCAATAGTTTTCCACGAAGAGGGAACACTCCATATCTCTCGCGACCG 326263 || ||||| ||||||| || || || ||||| |||||||| ||||| ||||||||| Sbjct 4522 GCTTCGCGCACGTTCAGAAGCTTGCCGCGAAGCGGGAACACGCCATAGTAATCGCGACCG 4463 Query 326264 ACCACGGACAGCCCTGCGATTGCAAGTGTCGCT---GCGGAATCCCCCTCCGTCAGAATG 326320 | || || || |||| || || || |||| || || || |||||||||||||| Sbjct 4462 ATGACCGAAAGGCCTGAAATCGCGAG---CGCTTTGGCAGAGTCACCCTCCGTCAGAATC 4406 Query 326321 AGAGTGCACATTTTGCTGTTATTCGTTCCAGC---CCATG-TAGCATCGTTGAGTTTGGG 326376 | ||||||| |||| | | ||| ||| || || | ||||||| ||||| || Sbjct 4405 AAAGTGCAC---TTGCAG-GACTCGCGAGAGCCGGCCTTGTTTGCATCGTCCAGTTTAGG 4350 Query 326377 AATTCCAGTCACTCGGATCTTCTTGGTACCGTCGGTCTTCTTCAGCTCTTTCT 326429 | ||| || |||||||||| ||||| ||||| |||||| |||| Sbjct 4349 CACGCCAAGAACCTTGATCTTCTTGCCGCCGTCTGTCTTGGACAGCTCCTTCT 4297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179608845433492