Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq147 100 6e-16 seq2016 86.0 1e-11 >seq147 Length=5172 Score = 100 bits (110), Expect = 6e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 333314 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 333373 ||| ||||| || || | | || ||||| ||||| ||||||||||| ||| ||||||| Sbjct 2985 CTCCTTGTCATCGCCATACTCGTACCGCCACTGGATGTACTGGTTGGGCGTCTTGTCAAG 3044 Query 333374 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 333433 ||| ||| ||||| ||||| || |||||||| || || || | ||| || ||||| Sbjct 3045 ATGCATCTCAATGTGATGGAACGCGTGCTGTGCGACATATGCGACACGTGCGTTCGGATG 3104 Query 333434 CTTCCAAACACTTCCGTTGGTGGCTTCCATTTGCCCCGTGAGCACCTTAATGAGAGTGCT 333493 |||||| ||| | || | || ||| | | ||||| || | ||| |||| || Sbjct 3105 CTTCCACACATTACCAATCTGGGGTTCAACCTCTCCCGTCAGTAGCTTGATGATCGTCGA 3164 Query 333494 TTTTCCCGCACCATT 333508 ||| ||||| || || Sbjct 3165 TTTACCCGCTCCGTT 3179 >seq2016 Length=8234 Score = 86.0 bits (94), Expect = 1e-11 Identities = 162/233 (70%), Gaps = 14/233 (6%) Strand=Plus/Minus Query 298325 GCATCGCGGACATTCAATAGTTTTCCACGAAGAGGGAACACTCCATATCTCTCGCGACCG 298384 || ||||| || |||| || || || ||||| |||||||| ||||| ||||||||| Sbjct 4522 GCTTCGCGCACGTTCAGAAGCTTGCCGCGAAGCGGGAACACGCCATAGTAATCGCGACCG 4463 Query 298385 ACCACGGACAGCCCTGCGATTGCAAGTGTCGCT---GCGGAATCCCCCTCCGTCAGAATG 298441 | || || || |||| || || || |||| || || || |||||||||||||| Sbjct 4462 ATGACCGAAAGGCCTGAAATCGCGAG---CGCTTTGGCAGAGTCACCCTCCGTCAGAATC 4406 Query 298442 AGAGTGCACATTTTGCTGTTATTCGTTCCAGC---CCATG-TAGCATCGTTGAGTTTGGG 298497 | ||||||| |||| | | ||| ||| || || | ||||||| ||||| || Sbjct 4405 AAAGTGCAC---TTGCAG-GACTCGCGAGAGCCGGCCTTGTTTGCATCGTCCAGTTTAGG 4350 Query 298498 AATTCCAGTCACTCGGATCTTCTTGGTACCGTCGGTCTTCTTCAGCTCTTTCT 298550 | ||| || |||||||||| ||||| ||||| |||||| |||| Sbjct 4349 CACGCCAAGAACCTTGATCTTCTTGCCGCCGTCTGTCTTGGACAGCTCCTTCT 4297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102837410220900