Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq216 154 2e-32 seq1059 145 9e-30 seq963 107 2e-18 seq2016 89.7 6e-13 >seq216 Length=49752 Score = 154 bits (170), Expect = 2e-32 Identities = 287/412 (70%), Gaps = 16/412 (4%) Strand=Plus/Minus Query 10787 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 10846 |||||||| ||||||||||| || | ||| ||| || | ||| ||||||||| ||| Sbjct 1355 CGATCAAATCGACCTGGGCGCAGCAACGCGCGGTCCAGCACATCGGAGCGGTTCGTTGCC 1296 Query 10847 GCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAG---TTGA 10903 |||||||| | ||| || | | ||||| || |||||||| || ||| |||| Sbjct 1295 GCGATGACGATGATTCCGCTGTTCGCCTCAAACCCGTCCATCTC---CACGAGCATTTGA 1239 Query 10904 TTGATGGTTTGTTCGCGTTCATCATT--CGCGGGC-ATACCACCCGCACTGCGTTGCTTA 10960 || | ||||| || ||||| ||||| | | ||| ||||| || | ||| || Sbjct 1238 TTCAGCGTTTGCTCACGTTCGTCATTTCCACCGGCGATACCG---GCTCCGCGCTGGCGT 1182 Query 10961 CCGACGGCGTCAATTTCATCGATGAAAACGATACACGGTT-GATTTTCACGGGCAACTTC 11019 ||||| ||||| ||||| || ||||||| ||| || ||| | ||||| | | Sbjct 1181 CCGACCGCGTCGATTTCGTCAATGAAAATGATGCAAGGTGCGTTTTTCTTTGCGTTCGAG 1122 Query 11020 AAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGGCGGC 11079 ||| | ||| || || | | || || |||||||||||||| |||||||| | || | | Sbjct 1121 AAA-AGATCACGCACACGCGAAGCGCCCACACCCACAAACATCTCCACAAACTCGGAGCC 1063 Query 11080 GGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCT 11138 | | || | || |||||||||| || ||||| || | ||| || || || ||||||| Sbjct 1062 TGCA-ATCGAGAAGAAGGGGACGCCGGCCTCACCGGCCACGGCGCGCGCAAGCAGGGTCT 1004 Query 11139 TCCCCGTCCCAGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACC 11190 | ||||| || || ||| | |||| ||||||| ||||| |||| || Sbjct 1003 TACCCGTTCCTGGAGGACCTTCCAGAATCACACCACGCGGGATTTTGGCGCC 952 >seq1059 Length=17963 Score = 145 bits (160), Expect = 9e-30 Identities = 383/584 (66%), Gaps = 3/584 (1%) Strand=Plus/Plus Query 114452 TTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCA 114511 |||||| || || || || || ||||||| || ||||| | ||| || | Sbjct 15833 TTGACAAACATATTCAGCGCAATGGACGCCAAGTTGCACACGGCCACCTCGTCAGGTGCT 15892 Query 114512 GTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGA 114571 |||||||| || ||||| || |||||||| || || ||||| | ||||| || Sbjct 15893 GTGTACTCAATGATTTCTGTGCACAAATTGCTGCTGCGGATTGTGCCGAGGTTCTGCTGG 15952 Query 114572 TTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGG 114631 || ||||||| ||| ||||||||||| |||||||| || || || ||||| | || Sbjct 15953 TTCGACTTTGAGTTGGCGGCATCCTTGTACAGCATGTACGGTGTGCCGGTCTCAATCTGC 16012 Query 114632 GACTTGAGAATAGCCTTCCAGACATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCC 114691 || | || | || ||| | | | || || | || || || || || || Sbjct 16013 GAGTCAAGCACCGCAAACCACAGTTTGCGCGCCGGAATCGTCTCGCGCGCGCGGCCTTCG 16072 Query 114692 TCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGT 114751 | |||||||| ||||| || || || || || |||| | || | || || || Sbjct 16073 TTTTCGTACTTGGTGTACAGCGCCTCGAAGTCCGGACCCCACGTGTCGCACAGTCCCGGC 16132 Query 114752 GCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGG 114811 || | | ||||||||||| ||| || || ||||||| || ||||||||||| ||| Sbjct 16133 GCTTCGTTGGGGCAGAAGAGGCTCCACTGTCCGTCCTCCTCCACTCGCTTCATGAACAGG 16192 Query 114812 TCTGGGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTG 114871 || || |||| || || | |||||||| || || | ||||| | || || || Sbjct 16193 TCCGGCGTCCACAGCGCGTAAAAGAGATCACGCGCACGTGACTCTTCCTTGCCGTGGTTC 16252 Query 114872 AGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATT 114931 |||| || | || || | || || ||||||||||| || | ||| || | Sbjct 16253 TTGCGCAGGTCGAGGAACTCAAAAATGTCGGCGTGCCACGGCTCAATGTAGCAGGCAAAC 16312 Query 114932 GACCCCTTACG---ACGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGA 114988 | || || || || ||| |||| | || || | ||||||| |||| | || || Sbjct 16313 GCACCTTTGCGCTTACCACCGCCCTGATCCACGTAACGCGCTGTGTCATTGTACACTCGC 16372 Query 114989 AGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAAT 115032 |||||||| | || || | || ||||||||| |||||||| Sbjct 16373 AGCATTGGTACAATGCCGTTTGACGAGCCATTTGTGCCCCGAAT 16416 Score = 87.8 bits (96), Expect = 2e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 113896 ATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGT 113955 |||||| || ||||| | ||||| |||||||| ||| | | ||||| || | ||| Sbjct 15244 ATGCTTGTTAACAACGGCGAACTCGCCCGCGAGAACGCGGCGCGTGTAGATGTTTGACGT 15303 Query 113956 GTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCATGGG 114015 ||| || ||||||||||| |||||||||| || || | ||||| || || |||||||| Sbjct 15304 GTACGGTTCAAAGCACTCGTTGTTACCCAGAATCTGCGACGTGGAAGCAGTCGGCATGGG 15363 Query 114016 TGC 114018 || Sbjct 15364 CGC 15366 >seq963 Length=27641 Score = 107 bits (118), Expect = 2e-18 Identities = 307/466 (66%), Gaps = 7/466 (2%) Strand=Plus/Plus Query 126047 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCT 126106 ||||| || ||| ||||||||||| || || || || ||||| ||| ||||| Sbjct 17250 GCAAAGTCGCAGTGCAGACCCTCGTCTCGCGAAATCAGCTCATTGCTGAACGTGAGTCCA 17309 Query 126107 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATT 126166 |||||||| || |||||||| | ||| || || || || || || || ||||| || ||| Sbjct 17310 GGCATGAGCCCGCGCTTCTTGAGCCAAAAGATTGCGCAGAAAGAGCCGGAGAAAAAAATT 17369 Query 126167 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGA-GCGCGACTTTGTGTCAAA 126225 || || || || ||||| | |||||||| |||||||| ||| | | || | | Sbjct 17370 CCTTCGACTGCGGCAAACGCGACCAGACGCTCTGCAAAGGATGCGTG-CGATGAG---AT 17425 Query 126226 CCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTC-TGGATCGCTTCAA 126284 |||| ||| ||||||| |||||||||| | || |||| || | || || | | Sbjct 17426 CCACGTCAAAGCCCACTCGGCCTTTTTCTTCACGCA-GGGAATCTCTTCCATAGCGTGGA 17484 Query 126285 AGAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTT 126344 |||| | |||||||| ||| || | |||| | || ||||| || || |||| Sbjct 17485 AGAGATGGTTCTTTTCCTCTGGGTCGGACACGTACGTGTCAATGAGCAAGGAGTACGTTT 17544 Query 126345 CGCCGTGGACCATTTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCT 126404 | ||||| | || | | ||| | | || || |||||||||| |||| Sbjct 17545 CCGAGTGGATGTTCTCCATCGCGATCTGGAAGCCATAAAAGCAGCGCGCTTCCGGGATCT 17604 Query 126405 GTACCTCATCGGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAA 126464 | || || | | || | | |||||| | ||| ||||| || || | || | Sbjct 17605 GGACGTCCTTCGAGAAGCGCTCGCACAAATTCTCCAGAACGATTCCGTCCGATGCGGCGA 17664 Query 126465 AAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCAG 126510 | || || || | || ||| ||||| | ||| |||| || ||| || Sbjct 17665 AGAAGGCGAGCACATGCTTGATGAAGTGCTGCTCATCCTTGTTGAG 17710 >seq2016 Length=8234 Score = 89.7 bits (98), Expect = 6e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 172798 CTTCCCACGGAGAGGGAACACACCGTAGTGATCACGACCAACCACAGAAAGACCAGCAAC 172857 ||| || || || |||||||| || |||| ||| ||||| | || ||||| || | || Sbjct 4502 CTTGCCGCGAAGCGGGAACACGCCATAGTAATCGCGACCGATGACCGAAAGGCCTGAAAT 4443 Query 172858 TGCGAGGGTCTTCGCGGAATCACCCTCCGTCACGATGAGCGTACACTTTCCAGATTGTGC 172917 ||||| | || || || ||||||||||||| || | || ||||| | || | Sbjct 4442 CGCGAGCGCTTTGGCAGAGTCACCCTCCGTCAGAATCAAAGTGCACTTGCAGGACTCGCG 4383 Query 172918 CGTCCCCGCCTTGTTCGCATCGTCCAACTTGGGAATACCAGTAATTTTGGACTTGCGGGC 172977 | || |||||||| |||||||||| || || | ||| || ||| ||| | | Sbjct 4382 AGAGCCGGCCTTGTTTGCATCGTCCAGTTTAGGCACGCCAAGAACCTTGATCTTCTTGCC 4323 Query 172978 ACCATCTGTCTTCTTGAGTTCCTTCATCTCCTTGAACTT 173016 || |||||||| || |||||| || ||||||||| Sbjct 4322 GCCGTCTGTCTTGGACAGCTCCTTCTCCTGCTTGAACTT 4284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597331094703120