Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq1200 138 1e-27 seq2751 93.3 5e-14 seq970 87.8 2e-12 >seq1200 Length=24482 Score = 138 bits (152), Expect = 1e-27 Identities = 164/217 (76%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 |||| |||||| || | ||| |||||| ||||| ||||| || | || || ||| || Sbjct 18681 CGCAGCACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCCGAGAGCGTGCGCCCG 18740 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || ||||||||||| || ||||| || | |||||||| || | || | || ||||||| Sbjct 18741 TCCTCTAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGATCTGGCGGGATGCCCTCCTTG 18800 Query 42114 TCCATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 ||| ||| | || | |||| ||| | | | |||||| || ||||| |||| ||||| Sbjct 18801 TCC-TGAATCTTCGCCTTGA-CGTTGTCGATCGTGTCCGAGGACTCCACCTCGAGCGTGA 18858 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || |||||||| |||||||| |||||||| ||||| Sbjct 18859 TCGTCTTGCCCGTCAGCGTCTTCACAAAGATCTGCAT 18895 >seq2751 Length=18403 Score = 93.3 bits (102), Expect = 5e-14 Identities = 111/148 (75%), Gaps = 2/148 (1%) Strand=Plus/Minus Query 42062 CTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGAT 42121 |||||| || ||||| || || ||||||||||| | || | || |||||||||| ||| Sbjct 18403 CTGCTTTCCGGCGAAAATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCC-TGAA 18345 Query 42122 TTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGC 42180 | || | || | | | | ||||||| ||| ||||| |||| ||||||||| || | Sbjct 18344 TCTTGGCCTTCACATTATCAATCGTGTCGGACGACTCCACCTCGAGCGTGATGGTCTTTC 18285 Query 42181 CCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || |||||||| ||||| || ||||| Sbjct 18284 CGGTCAGCGTCTTCACAAAAATCTGCAT 18257 >seq970 Length=23808 Score = 87.8 bits (96), Expect = 2e-12 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||| ||||| ||||| || |||||| || || || || || | ||| || || | Sbjct 22517 ACGCAGAACCAAGTGCAAGGTCGACTCCTTCTGGATGTTATAGTCTGACAGTGTTCGTCC 22576 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| || |||||||| || || || || | ||||||||||| | || | || ||||| Sbjct 22577 GTCCTCCAGCTGCTTGCCCGCAAAAATCAAGCGCTGCTGGTCTGGCGGGATGCCTTCCTT 22636 Query 42113 GTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 || | ||| | || | |||| | | | ||||| || || || || | ||||| Sbjct 22637 GT-CTTGAATCTTCGCCTTGACATTATCGATGGTGTCCGAGGACTCGACCTCCAACGTGA 22695 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 | || |||||||| || ||||| || || || ||||| || Sbjct 22696 TTGTCTTGCCCGTGAGGGTCTTGACGAAAATCTGCATGTT 22735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543192334457760