Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq1059 102 8e-17 seq970 91.5 1e-13 seq2049 82.4 8e-11 >seq1059 Length=17963 Score = 102 bits (112), Expect = 8e-17 Identities = 370/566 (65%), Gaps = 15/566 (3%) Strand=Plus/Plus Query 154587 GACGCCAAGTTGCAAACGGCAATTTCTTCAGAACTACTGTATTGCACAATTTCTGCGCAC 154646 |||||||||||||| ||||| | || |||| |||| | | ||||||| |||| Sbjct 15857 GACGCCAAGTTGCACACGGCCACCTCGTCAGGTGCTGTGTACTCAATGATTTCTGTGCAC 15916 Query 154647 AAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTCGA-TTTGATGTTGCATGCGTC 154705 ||||| |||| || || ||||| ||||| | ||| ||||| ||||| |||| || || Sbjct 15917 AAATTGCTGCTGCGGATTGTGCCGAGGTTCTGCTGGTTCGACTTTGA-GTTGGCGGCATC 15975 Query 154706 TTTGTACAAAATGTACGGGGTGCCCGTTTCCACTTGGGTTTCAATAATTGTGCGAA--AC 154763 ||||||| |||||||| ||||| || || | || | |||| | || || || Sbjct 15976 CTTGTACAGCATGTACGGTGTGCCGGTCTCAATCTGCGAGTCAAGCA--CCGCAAACCAC 16033 Query 154764 AGACTTCGCGCCTCAACTTGACAAG-TAAATCGATTTTCGCTCTCATA-TTGTTCGTACA 154821 || | |||||| || | | | | || |||| | || || ||| | ||||| Sbjct 16034 AGTTTGCGCGCCGGAA-TCGTCTCGCGCGCGCGGCCTTCGTTTTCGTACTTGGT-GTACA 16091 Query 154822 GTTTTTCAAACTCTAAACTGTACACGTCCGACAAACCGGGACAGCGGTCGGGACACATCA 154881 | || || || || || ||| ||| || || || ||| || | | Sbjct 16092 GCGCCTCGAAGTCCGGACCCCACGTGTCGCACAGTCCCGGCGCTTCGTTGGGGCAGAAGA 16151 Query 154882 ATGACCACATTTCGTTTTGTTGTACGCGTTTCATAAACAAATCCGGCACCCACAAAGCGT 154941 |||| | ||| | | || || ||||| |||| |||||| ||||| |||| Sbjct 16152 GGCTCCACTGTCCGTCCTCCTCCACTCGCTTCATGAACAGGTCCGGCGTCCACAGCGCGT 16211 Query 154942 ACAACAAATCACGCGCCTTTTTGTCTTCAGCGCCCATGTT-TCGCTTTAAATTCAAAAAA 155000 | || | ||||||||| | ||||| ||| ||| | || | | | || Sbjct 16212 AAAAGAGATCACGCGCACGTGACTCTTCCTTGCCGTGGTTCTTGC-GCAGGTCGAGGAAC 16270 Query 155001 TCATATATGTCGGCGTGCCACGGCTCTAAATATACGGCCATCGCGCCTTTGCGTTT---T 155057 ||| | |||||||||||||||||||| | || ||| | ||| |||||||| || Sbjct 16271 TCAAAAATGTCGGCGTGCCACGGCTCAATGTAGCAGGCAAACGCACCTTTGCGCTTACCA 16330 Query 155058 CCTCCTTGATCCACGTGACGCACACAATTATTGTACACGCGCAACAATGGTTCCACGCCG 155117 || || |||||||||| |||| | | ||||||||| |||| || |||| | | |||| Sbjct 16331 CCGCCCTGATCCACGTAACGCGCTGTGTCATTGTACACTCGCAGCATTGGTACAATGCCG 16390 Query 155118 CTGGCCGTGCCGTTGGTGCCACGTAT 155143 | | || ||| || ||||| || || Sbjct 16391 TTTGACGAGCCATTTGTGCCCCGAAT 16416 >seq970 Length=23808 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| || || || ||||| || |||| | || || |||| || ||||||||||| Sbjct 22536 GTCGACTCCTTCTGGATGTTATAGTCTGACAGTGTTCGTCCGTCCTCCAGCTGCTTGCCC 22595 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| |||| | ||||||||||| || || || ||||| || ||||| || || ||| Sbjct 22596 GCAAAAATCAAGCGCTGCTGGTCTGGCGGGATGCCTTCCTTGTCTTGAATCTTCGCCTTG 22655 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | || || || || || || | || | |||||||| || | || Sbjct 22656 ACATTATCGATGGTGTCCGAGGACTCGACCTCCAACGTGATTGTCTTGCCCGTGAGGGTC 22715 Query 64427 TTTACGAAAATTTGCATTTT 64446 || |||||||| ||||| || Sbjct 22716 TTGACGAAAATCTGCATGTT 22735 >seq2049 Length=21382 Score = 82.4 bits (90), Expect = 8e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| | |||| |||||| || || || |||||||| |||| | ||||| |||| Sbjct 21270 AGCACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCTGACAGCGTGCGGCCGTCC 21329 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTC 64344 || |||||||| ||||| |||| || ||||||||||| || || || || || Sbjct 21330 TCCAGCTGCTTTCCGGCGAAAATCAGGCGCTGCTGGTCCGGCGGGATGCCCTC 21382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499625975882160