Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_010811.2 Length=231255 Score E Sequences producing significant alignments: (Bits) Value seq1962 87.8 3e-12 >seq1962 Length=79148 Score = 87.8 bits (96), Expect = 3e-12 Identities = 102/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 40976 ATCCATCCGCACGGCGTCGCGTTGATGCCGGACGCGCACGCAGGCATCGGCAGCACGGTA 41035 ||||||||||| ||| | ||| ||||||| |||||||| ||||| ||| |||||| Sbjct 52313 ATCCATCCGCAGGGCATTGCGGTGATGCCAGACGCGCATCTGGGCATGGGCGCCACGGTG 52254 Query 41036 GGATCGGTGATCGCTACGCAAG-GTGCCATCATTCCGGCGGCGGTGGGCGTGGACATCGG 41094 ||| || ||| | || || | || ||||| ||||| ||||| |||||||| || || Sbjct 52253 GGAAGTGTAATCCCAAC-CACGAAAGCAATCATCCCGGCCGCGGTCGGCGTGGATATTGG 52195 Query 41095 CTGCGGCATGGTGGC 41109 || || |||||||| Sbjct 52194 ATGTGGTATGGTGGC 52180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 739860124719600