Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq1059 194 2e-44 >seq1059 Length=17963 Score = 194 bits (214), Expect = 2e-44 Identities = 607/931 (65%), Gaps = 22/931 (2%) Strand=Plus/Minus Query 93718 TACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGG 93777 ||||| ||||||| ||||| || || || |||||||| | ||| | || | Sbjct 16773 TACGACTACTTTGGGTTCAAGACGCTCGAACGTTCGTACCTTTTGCGCATGAACGGACAG 16714 Query 93778 GTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGAC 93837 || ||||||||||| || ||||||||||||| || | || || ||| |||||| Sbjct 16713 GTGGTGGAGCGACCGCAGCACATGCTGATGCGCGTGGCAGTAGGCATCCACATGCACGAC 16654 Query 93838 ATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGA-CAAGAGGTATAC---CATGGC 93893 || |||| ||| | | | | | || ||| | ||| || | | | |||| | Sbjct 16653 ATCCCGAGCGTTCTCGAGACGTAC---GAAATGTTGTCGCAAAAGTTCTTCACGCATG-C 16598 Query 93894 CACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGAT 93953 | | ||||| ||||||| || | || ||| || ||| | ||||| || ||| | Sbjct 16597 CTCGCCGACTTTGTTCAATGCAAGCACGCCGCGCCCGCAGCTCAGCTCGTGCTTTCTGCT 16538 Query 93954 GACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCAT 94013 ||| | || | ||||| ||| || || | || | || ||| ||| ||| || Sbjct 16537 GACCATGAAAGAAGACTCGATCGAAGGCATCTATGATACGCTGAAGCGCTGCGCGGTGAT 16478 Query 94014 CTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCA---CGA-CGTACGTGCCAGGGGTT 94069 || || | || || || ||||| || |||| ||| | | ||||||| Sbjct 16477 TTCCAAGTCAGCCGGCGGCATCGGTCTC----TCCATTTCGAACATCCGTGCCACCAAGA 16422 Query 94070 CCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCA 94129 |||||| || || || |||||| | || |||||| | || || ||||| || || | || Sbjct 16421 GCTACATTCGGGGCACAAATGGCTCGTCAAACGGCATTGTACCAATGCTGCGAGTGTACA 16362 Query 94130 ACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCT 94189 | || | ||||| |||||||| ||||| ||||| | | | || ||| | || || || Sbjct 16361 ATGACACAGCGCGTTACGTGGATCAGGGCGGTGGTAAGCGCAAAGGTGCGTTTGCCTGCT 16302 Query 94190 ATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCA 94249 | | ||||| |||||||| ||| | | ||| |||||||||| ||||||||||||| Sbjct 16301 ACATTGAGCCGTGGCACGCCGACATTTTTGAGTTCCTCGACCTGCGCAAGAACCACGGCA 16242 Query 94250 ACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGA 94309 | || | | || | || ||||| ||||| || ||| ||| ||||| || |||| Sbjct 16241 AGGAAGAGTCACGTGCGCGTGATCTCTTTTACGCGCTGTGGACGCCGGACCTGTTCATGA 16182 Query 94310 AACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGT 94369 | || || ||| | || ||||| || || || ||||| ||| || ||||||| Sbjct 16181 AGCGAGTGGAGGAGGACGGACAGTGGAGCCTCTTCTGCCCCAACGAAGCGCCGGGACTGT 16122 Query 94370 CCGACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACG-AATCGCAGG--GCA 94426 |||| || || || || || | |||| | |||| || || ||| || Sbjct 16121 GCGACACGTGGGGTCCGGACTTCGAGGCGCTGTACACCAAGTACGAAAACGAAGGCCGCG 16062 Query 94427 AGGCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGG 94486 | | || | || | || | || |||||| | | | | ||| ||| | | Sbjct 16061 CGCGCGAGACGATTCCG---GCGCGCAAACTGTGGTTTGCGGTGCTTGACTCGCAGATTG 16005 Query 94487 AGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGC 94546 |||| || || || ||||| ||| |||||| | | |||| | ||||| ||||||||| Sbjct 16004 AGACCGGCACACCGTACATGCTGTACAAGGATGCCGCCAACTCAAAGTCGAACCAGCAGA 15945 Query 94547 ACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGG 94606 ||||||| ||| ||| ||| ||||||| || || | ||||| || | || | Sbjct 15944 ACCTCGGCACAATCCGCAGCAGCAATTTGTGCACAGAAATCATTGAGTACACAGCACCTG 15885 Query 94607 ACGAGATTGCTGTGTGTAACCTGGGCTCCAT 94637 ||||| | || ||||| ||| ||| ||||| Sbjct 15884 ACGAGGTGGCCGTGTGCAACTTGGCGTCCAT 15854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494704561303440