Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq963 178 1e-39 seq1059 105 7e-18 seq1200 104 2e-17 seq970 93.3 4e-14 >seq963 Length=27641 Score = 178 bits (196), Expect = 1e-39 Identities = 348/501 (69%), Gaps = 14/501 (3%) Strand=Plus/Minus Query 52341 AAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCGCCACGCTGGCCGAGCGC 52400 |||||||| ||||||| ||| ||||||| | || ||| || | | || ||||| Sbjct 17452 AAAAAGGCCGAGTGGGCTTTGACGTGGATCTC-ATCG-CAC-GCATCCTTTGCAGAGCGT 17396 Query 52401 ATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCCATCTTT 52460 |||| || || ||| |||||| || | ||||| |||||| || ||| |||||| Sbjct 17395 CTGGTCGCGTTTGCCGCAGTCGAAGGAATTTTTTTCTCCGGCTCTTTCTGCGCAATCTTT 17336 Query 52461 TACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGC 52520 | | || | | || | ||||| || || ||||||||||| ||| |||| ||||| Sbjct 17335 TGGCTCAAGAAGCGCGGGCTCATGCCTGGACTCACGTTCAGCAATGAGCTGATTTCGCGA 17276 Query 52521 GACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGACGCGCGTGACCG-AAAA 52579 ||||| || |||||| |||||||||||||||| |||| || ||| ||| | || Sbjct 17275 GACGAGGGTCTGCACTGCGACTTTGCGTGCCTCTTGTACA----GCATGTGCCCGCAGAA 17220 Query 52580 ATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAGGCGGTGGCTATCGAAAAGGAGTT 52639 || || ||| | || | ||| ||| | || || || ||| ||||| || Sbjct 17219 GCTGCCGAACGAAACGGTGCTCAACATCATCACGAGCGCTGTTGCGTGCGAGAAGGAATT 17160 Query 52640 TTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAAC-GCGCAGTCCATGTGCG-AG 52697 | ||| | |||||||||| ||| || | || |||||| ||| | | ||| ||| | Sbjct 17159 TATTATTGACGCGCTGCCGTGCGACTTGATCGGGATGAACAGCGAACT-TATG-GCGCAA 17102 Query 52698 TACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCA-GCCAAAGTACTTCAA 52756 || || |||||||| || || || ||| | | |||||||| | ||||| | | | Sbjct 17101 TATATTGAGTTTGTCGCCGACCGCCTGCTCCAGTCCCTCGGGCACGAAAAAGT-TTACCA 17043 Query 52757 CGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTT 52816 ||| ||||| |||||||| | ||| | |||||||| || || |||||||||||||| Sbjct 17042 CGCCCGCAACCCGTTTGACTGGATGGAGCTGATTTCGCTCGAAGGGAAGACCAACTTTTT 16983 Query 52817 CGAGAAGCGAGTCGGCGAGTA 52837 |||||||| || || ||||| Sbjct 16982 TGAGAAGCGTGTGGGAGAGTA 16962 >seq1059 Length=17963 Score = 105 bits (116), Expect = 7e-18 Identities = 422/653 (65%), Gaps = 31/653 (5%) Strand=Plus/Plus Query 153929 CATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCGCGCGC-CTTGCAATCCTCCG 153987 ||||||||| |||||| ||| |||||||| | ||| || ||||| | || | || ||| Sbjct 16183 CATGAACAGGTCCGGCGTCCACAGCGCGTAAAAGAGATCACGCGCACGTG-ACTCTTCCT 16241 Query 153988 CGCCCATGTT---GCGTTTCAGATTGAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAA 154044 ||| ||| ||| ||| | ||| | | | |||||||||||||| || |||| Sbjct 16242 TGCCGTGGTTCTTGCG---CAGGTCGAGGAACTCAAAAATGTCGGCGTGCCACGGCTCAA 16298 Query 154045 TGTAGACGGCCAGGGCACCTTTACGCTT---TCCGCCCTGATCGACGTGGCGCACCATAT 154101 ||||| ||| | |||||||| ||||| ||||||||||| |||| ||| | | | Sbjct 16299 TGTAGCAGGCAAACGCACCTTTGCGCTTACCACCGCCCTGATCCACGTAACGCGCTGTGT 16358 Query 154102 TGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGCGGTGCCGTTGGT----CGAA--T 154155 ||| | || |||| ||| ||| | | |||| ||| | ||| || || |||| | Sbjct 16359 CATTGTACACTCGCAGCATTGGTACAATGCCGTTTGACGAGCCATTTGTGCCCCGAATGT 16418 Query 154156 TGATCTTGCTGCCGCGG--GCGCGCACTTGATGCACGTTAACGCCAATGCCGCCGCCGTA 154213 | ||||| || | ||| | || | | || | || ||||||||| | | Sbjct 16419 AGCTCTTGGTGGCACGGATGTTCGAAATGGA--------GAGACCGATGCCGCCGGCTGA 16470 Query 154214 CTTTGATATGGCAGCGCAGTCGC-CCAGCGTCCTGTAGATGCCGTCGATGCTATCGTCGC 154272 ||| || || | |||||| ||| |||||| |||||||| ||||| || || Sbjct 16471 CTTGGAAATCACCGCGCAG-CGCTTCAGCGTATCATAGATGCCTTCGATCGAGTCTTCTT 16529 Query 154273 GGACGCCGAGCAAGAAACACGAACACATTTGCGGAATGCGCGTTCCCGCCGAAAAGAGGG 154332 | | |||| || ||||| | | ||||| |||| | || || | | Sbjct 16530 TCATGGTCAGCAGAAAGCACGAGCTGAGCTGCGGGCGCGGCGTGCTTGCATTGAACAAAG 16589 Query 154333 TGGGACTCGCGTGCGTAAACAGTTTTTGGCTCATCATGCGGTACGTTTCGATGGCGTCTT 154392 | || || ||||| || | ||||| || ||| |||||| |||| || Sbjct 16590 TCGGCGAGGCATGCGTGAAGAACTTTTGCGACAACATTTCGTACGTCTCGAGAACGCTCG 16649 Query 154393 CGATATCATCGCCGTGAATGCCGAGCGCGACGCGCATGAGCATGTGCTGCGGACGTTCGG 154452 ||| || | ||| ||||| | || |||||||| |||||||||||||| || || Sbjct 16650 GGATGTCGTGCATGTGGATGCCTACTGCCACGCGCATCAGCATGTGCTGCGGTCGCTCCA 16709 Query 154453 CGACTCTAT-TGTCAATCTTCAAGAGATATCCATTTTCGAGGGTTTTGTAACCGAAATAC 154511 | || || | || || ||| || || | |||||| || ||| | || || || Sbjct 16710 CCAC-CTGTCCGTTCATGCGCAAAAGGTACGAACGTTCGAGCGTCTTGAACCCAAAGTAG 16768 Query 154512 TTGTATTCAAAATCTAGCTCATGAGCGATGGCCGCATCGAGCGTCGCGGCATG 154564 | ||| ||||| | || | | ||| ||||||||||||||| |||| || Sbjct 16769 TCGTAGCAGAAATCGCGGTCGTAAATGATCGCCGCATCGAGCGTCTCGGCGTG 16821 >seq1200 Length=24482 Score = 104 bits (114), Expect = 2e-17 Identities = 166/235 (71%), Gaps = 4/235 (2%) Strand=Plus/Plus Query 138383 CGCAGCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGT 138442 ||| ||| || |||| |||| || || || | | | |||||||| ||||||||||||| Sbjct 18664 CGCCGCCTCCGCGCAGGCGCAGCACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAGT 18723 Query 138443 CGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCG 138502 | | || ||| |||||| || || || || | |||| | ||||| || || | Sbjct 18724 CCGAGAGCGTGCGCCCGTCCTCTAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGATCTG 18783 Query 138503 GAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGA 138560 | || || || || ||||| ||| | || | || | ||| || | ||||| | || Sbjct 18784 GCGGGATGCCCTCCTTGTC-CTGAATCTTCGCCTTGACGTTG-TCGATCGTGTCCGAGGA 18841 Query 138561 CTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 ||||||||||| ||| | ||| || || ||||| || || ||||| ||||||||| Sbjct 18842 CTCCACCTCGAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACAAAGATCTGCATG 18896 >seq970 Length=23808 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||| ||||| ||| || || | | | |||||||| || ||||| ||||| Sbjct 22505 GCCACCGCGCAGACGCAGAACCAAGTGCAAGGTCGACTCCTTCTGGATGTTATAGTCTGA 22564 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || |||||| || || || || | | | || | ||||| ||||| || || Sbjct 22565 CAGTGTTCGTCCGTCCTCCAGCTGCTTGCCCGCAAAAATCAAGCGCTGCTGGTCTGGCGG 22624 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGT-TCCACGGTGTCGGTCGACTCCA 138565 || ||||| ||||| ||| | || | || | | || | |||||| | ||||| | Sbjct 22625 GATGCCTTCCTTGTCT-TGAATCTTCGCCTTGACATTATCGATGGTGTCCGAGGACTCGA 22683 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 |||| | ||| | || || || || || || || || |||||||||||| Sbjct 22684 CCTCCAACGTGATTGTCTTGCCCGTGAGGGTCTTGACGAAAATCTGCATG 22733 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496243703314080