Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq1200 145 7e-30 seq970 96.9 3e-15 seq1059 84.2 2e-11 >seq1200 Length=24482 Score = 145 bits (160), Expect = 7e-30 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| | |||| |||||| || | || ||||| || ||||| ||||| || Sbjct 18669 CCTCCGCGCAGGCGCAGCACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCCGAG 18728 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || |||||||| || || ||| ||||||| ||||||||||| || || Sbjct 18729 AGCGTGCGCCCGTCCTCTAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGATCTGGCGGG 18788 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| || ||| ||||| |||| |||| ||||||| ||| || Sbjct 18789 ATGCCCTCCTTGTCCTGAATCTTCGCCTTGACGTTG-TCGATCGTGTCCGAGGACTCCAC 18847 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 |||| || | ||| ||||| ||||| || || ||||| ||||||||| Sbjct 18848 CTCGAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACAAAGATCTGCATG 18896 >seq970 Length=23808 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | |||| ||||| || | || ||||| || || || || || || | Sbjct 22506 CCACCGCGCAGACGCAGAACCAAGTGCAAGGTCGACTCCTTCTGGATGTTATAGTCTGAC 22565 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || || || ||||| || || || | ||||| |||||||| || || || Sbjct 22566 AGTGTTCGTCCGTCCTCCAGCTGCTTGCCCGCAAAAATCAAGCGCTGCTGGTCTGGCGGG 22625 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||| |||||||| || ||| ||||| | |||| |||||||| |||||| Sbjct 22626 ATGCCTTCCTTGTCTTGAATCTTCGCCTTGACATTATCGATGGTGTCCGAGGACTCGACC 22685 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | || | || ||||| || || || || || |||||||||||| Sbjct 22686 TCCAACGTGATTGTCTTGCCCGTGAGGGTCTTGACGAAAATCTGCATG 22733 >seq1059 Length=17963 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 146077 AACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGCTGGTGAACGGCTCGAACGACTCG 146136 |||||||| ||||||||||| | | || | ||| ||| |||| || || ||||| Sbjct 15263 AACTCGCCCGCGAGAACGCGGCGCGTGTAGATGTTTGACGTGTACGGTTCAAAGCACTCG 15322 Query 146137 TTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATGTACGCCACCAGCAAAGAGTTT 146196 |||||||| || ||||||| ||| | ||| || |||||| ||| |||| | ||||| Sbjct 15323 TTGTTACCCAGAATCTGCGACGTGGAAGCAGTCGGCATGGGCGCTACCAAGAGCGAGTTG 15382 Query 146197 CTCACGCCGTG 146207 | || |||||| Sbjct 15383 CGCAAGCCGTG 15393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475482885507360