Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq250 728 0.0 seq316 511 6e-140 seq181 87.8 2e-12 seq1212 84.2 3e-11 >seq250 Length=47047 Score = 728 bits (806), Expect = 0.0 Identities = 795/1047 (76%), Gaps = 8/1047 (1%) Strand=Plus/Minus Query 7487 TATCAACCAACAGCAGGTGCTTTGAGAGCAACAGG-AGTGTTCTCAGCAGCAGCAAGGTC 7545 |||| | |||||| || ||| | | |||||||| || | | ||| ||| || | ||| Sbjct 2273 TATCCATTAACAGCTGGAGCTGTTAATGCAACAGGTAGAGAT-TCACCAGACGCTAAGTC 2215 Query 7546 AAGAGGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCATGCCAAGACCAGCACGGTT 7605 | |||||||||||||| |||||||| ||||| |||||||| || | ||||||||| Sbjct 2214 TAATGGGAAGTTGTGAGCGTTACGCTCATGCATAACTTCCATACCTAAGTTAGCACGGTT 2155 Query 7606 GAGCACGTCTGCCCAGGTGTTCAGGACACGACCTTGACCATCAATGATGGACTGGTTGAA 7665 | | || ||||| ||||| | ||||||||||| | |||| | || |||||||| Sbjct 2154 AATGATATCAGCCCAAGTGTTAATTACACGACCTTGGCTGTCAACTACAGATTGGTTGAA 2095 Query 7666 GTTGAAACCGTTGAGGTTGAATGCCATGGTGCTAACACCAAGAGCAGTGAACCAGATGCC 7725 ||||||||| || | ||| || ||||| || ||| | || || ||||| || || Sbjct 2094 GTTGAAACCATTTAAGTTAAACGCCATAGTTGATACAGAGATAGATGTTAACCAAATACC 2035 Query 7726 AACAACTGGCCATGCTGCGAGGAAGAAGTGCAGCGAACGGGAGTTGTTGAACGAAGCGTA 7785 |||||||||||| | | ||||||||| || ||||| ||||||||||| ||| || Sbjct 2034 TACAACTGGCCATAAACCTAAGAAGAAGTGAAGTGAACGAGAGTTGTTGAAACTAGCATA 1975 Query 7786 TTGGAAGATCAGACGACCAAAGTATCCGTGAGCAGCAACGATGTTGTAGGTCTCTTCTTC 7845 |||||| || | |||||||||||| || || |||||||| ||||| || || |||||||| Sbjct 1974 TTGGAATATTAAACGACCAAAGTAACCATGTGCAGCAACAATGTTATAAGTTTCTTCTTC 1915 Query 7846 TTGACCGAACTTATAACCATAGTTCTGGGACTCAGACTCAGTGGTTTCACGAACCAGAGA 7905 |||||||||||| ||||||||||| || ||| ||||| |||||||| | | | Sbjct 1914 TTGACCGAACTTGTAACCATAGTTAGCAGATTCATTTTCAGTTGTTTCACGGATTAAACT 1855 Query 7906 AGAGGTTACAAGCGAACCATGCATCGCACTGAACAGAGAACCACCAAAGACACCAGCGAC 7965 ||| ||||| || ||||| ||||| |||||||| ||||| |||||||| |||||||| || Sbjct 1854 AGAAGTTACTAGTGAACCGTGCATAGCACTGAATAGAGATCCACCAAATACACCAGCAAC 1795 Query 7966 GCCCAGCATGTGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAAGACAAGCATGTA 8025 || | |||||| |||||||| || ||||| ||||| |||||||| |||| |||| | Sbjct 1794 ACCTAATTGGTGGAATGGGTGCATTAGAATGTTATGCTCAGCTTGGAATACAATCATGAA 1735 Query 8026 GTTGAACGTACCAGAGATGCCAAGAGGCATAGCGTCAGAGAAAGAACCTTGACCGAAAGG 8085 |||||| |||||||| || || | ||||||| | |||||||| |||||||| | || Sbjct 1734 GTTGAATGTACCAGAAATACCTAAAGGCATACCATCAGAGAAGCTGCCTTGACCAATCGG 1675 Query 8086 ATAGACGAGGAATACAGCAGATGCTGCAGCAACTGGAGCAGAGTATGCTACACAGATCCA 8145 |||| | ||||||||||| ||| || ||||||||||||||| |||| ||| |||||| Sbjct 1674 GTAGATCAAGAATACAGCAGTTGCAGCTGCAACTGGAGCAGAGAATGCAACAGCGATCCA 1615 Query 8146 GGGACGCATACCTAGACGGTAAGAAAGTTCCCACTCACGACCCATGTATGCATAG--ATA 8203 ||||||||||||| |||||| |||||||||||||||||||||||| ||| || | | Sbjct 1614 AGGACGCATACCTAAACGGTAGCTAAGTTCCCACTCACGACCCATGTA-GCA-AGCAACA 1557 Query 8204 CCGATCAGGAAGTGGAAGATAACGAGTTGGAAAGGACCACCGTTGTAGAGCCACTCATCA 8263 || | | ||||| || | | || || | ||||||||||| | |||||| || Sbjct 1556 CCTAGTAAAAAGTGTAATACGATTAGAGGGTAGCACCCACCGTTGTATAACCACTCGTCT 1497 Query 8264 AGAGAAGCTGCTTCCCAGATGGGATAGAAGTGGAGACCAATAGCGTTAGAAGAAGGAACA 8323 | |||||| |||||||| || || |||||||| | ||||||||| |||| |||| | Sbjct 1496 AAAGAAGCAGCTTCCCAAATTGGGTAGAAGTGAATACCAATAGCAGCAGAACTTGGAATA 1437 Query 8324 ACAGCACCAGAGATGATGTTGTTGCCATACATGAGCGAACCAGCGACGGGTTCACGGATG 8383 |||||||||||||| |||||||| || || | | |||||||| || ||||||||||| Sbjct 1436 ACAGCACCAGAGATAATGTTGTTACCGTATAGTAAAGAACCAGCAACTGGTTCACGGATA 1377 Query 8384 CCGTCAATGTCCACAGGAGGAGCAGCGACGAAAGCGACGATGAA-ACAAATAGCAGCAGC 8442 || ||||| || || ||||||||||| ||||| || | |||||| ||| | || ||| | Sbjct 1376 CCATCAATATCAACTGGAGGAGCAGCAACGAATGCAATGATGAATACAGA-AGTAGCTGT 1318 Query 8443 GAGCAGCGTAGGAATCATCAGGACACCGAACCAACCGACATACAGACGATTGTTGGTGGA 8502 | | ||||||||||| | ||||| |||||||||| ||| | ||| || | ||| Sbjct 1317 TAATAATGTAGGAATCATTAATACACCAAACCAACCGATATATAAACGGTTTTCAGTGCT 1258 Query 8503 GGTTACCCAGTTACAGAATTGTTCCCA 8529 || ||||| ||||| ||||||| Sbjct 1257 TGTAACCCAAGAGCAGAAACGTTCCCA 1231 >seq316 Length=14323 Score = 511 bits (566), Expect = 6e-140 Identities = 735/1029 (71%), Gaps = 8/1029 (1%) Strand=Plus/Minus Query 6257 TATCACAGAGCGTTGCCTCTTGGCAATACTTCTTCAGGAAATACAAAGTTTTCATGTGGT 6316 ||| | || ||||| || | ||||| || || || || |||| |||||||||||| || Sbjct 11173 TATTAAAGGGCGTTTCCACGTGGCAGAACCTCCTCTGGGAATATAAAGTTTTCATGAGGC 11114 Query 6317 TGATCCACTGGTGCCATCCAGGCACGTAGACCTTCATTCAATAGGATGTTCTTGGTATAG 6376 ||||| || |||||||| ||||| | |||||| |||||||| || || || |||||| Sbjct 11113 TGATCTTGTGCAGCCATCCATGCACGAATACCTTCGTTCAATAGAATATTTTTAGTATAG 11054 Query 6377 AACGTCTCGAACTCTGGATCCTCCGCTGCTCTGATCTCTTGTGAAACAAAGTCATAAGCT 6436 || || || || || |||||||| || ||||| | || || || ||||||||||||||| Sbjct 11053 AATGTTTCAAATTCAGGATCCTCTGCGGCTCTAAGTTCCTGAGATACAAAGTCATAAGCT 10994 Query 6437 CTAAGGTTAAGTGCAAGACCAATAATACCAATGCTAGAGGTCCAAAGACCCATAACAGGA 6496 || | || | ||| | || | ||| ||||| | ||||| | ||| |||| || Sbjct 10993 CTTAAATTTAATGCTAATCCTACAATGCCAATTGAACTTGTCCACAAACCAGTAACTGGT 10934 Query 6497 ACAAACAGCATAAAGAAATGTAGCCAACGCTTATTGCTGAAGGCGATACCAAAGATCTGA 6556 ||||||| |||||||||||||||||| | || || || || | |||||| || || Sbjct 10933 ACAAACAACATAAAGAAATGTAGCCATCTTTTGTTAGAAAAAGCAACACCAAAAATTTGT 10874 Query 6557 GACCAGAAACGATTAGCCGTGACCATCGAATAGGTCTCCTCTTCTTGTGTAGGCTCAAAC 6616 ||||| ||||| || || || ||||| ||||| || || || ||| || || ||| Sbjct 10873 GACCAAAAACGGTTTGCTGTTACCATTGAATATGTTTCTTCAGATTGAGTTGGAGTAAAA 10814 Query 6617 GCCTTGAAAGTATTTGATTGTTCACCATCTTCAAACAAAGTATTCTCTACAGTAGCACCG 6676 || | || || | | |||||||||||||| || ||||| || ||||||||||| Sbjct 10813 GCTCTAAATGTGTCCGCAGCGTCACCATCTTCAAATAAGGTATTTTCAACAGTAGCACCA 10754 Query 6677 TGAATAGCACAGAGCAATGCTCCACCTAAGATACCTGCTACACCCATCATATGAAACGGG 6736 || |||||||| | || || ||||| | ||||| ||||||||||||||||| || || Sbjct 10753 TGGATAGCACATAATAAGGCACCACCAAGAATACCAGCTACACCCATCATATGGAATGGA 10694 Query 6737 TTGAGCGTCCAGTTGTGGAAGCCCTGTAGGAAGAGTAAGAAGCGGAATATCGCTGCAACA 6796 || | ||||||||| || || ||||||| ||| | ||| || | || || || |||||| Sbjct 10693 TTTAACGTCCAGTTATGAAAACCCTGTAAGAATAATAAAAATCTAAAGATGGCAGCAACA 10634 Query 6797 CCAAACGACGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATACATGAGAAAGACAGAC 6856 ||||| || ||||| |||||||| | || || | ||||||||| | ||| || || Sbjct 10633 CCAAAACTAGGAGCAAAAAACCAACTAGCTTGGCCTAAAGGATACATTAAAAATACTGAT 10574 Query 6857 ACAAAGACAGCAATGGGACCAGAAAACGCGATTGCATTGTAGGGACGAATACCGACTAGA 6916 || || |||| || || || ||||| || || || || || || | | ||| || || Sbjct 10573 ACGAACACAGATATAGGTCCTGAAAAAGCAATAGCGTTATAAGGTCTCAAACCCACAAGT 10514 Query 6917 CGTGCGATCTCAAACTGCCG-AAGCATGAAACCTATAAGGGCAAAGGCTCCGTGGAGCGC 6975 | ||| ||||||||||| || || || |||||||| || |||| || || || | || Sbjct 10513 CTTGCAATCTCAAACTGACGTAAACAA-AAACCTATTAGTCCAAAAGCGCCATGTAAAGC 10455 Query 6976 CACAAAAGGCCATAGTCCCCCAAGTTGGAGCCAGCGGACGAAATCTCCCTGAGCTTCTGG 7035 | ||||| ||| || || || | || ||| | |||||| || ||||||||||| Sbjct 10454 TATAAAAGTCCAAAGACCACCTATCTGACACCATCTTGTGAAATCGCCTTGAGCTTCTGG 10395 Query 7036 ACCCCA-TAGAAGAAGTAGGGAATGTCCGAGAGCGTCAGCAGGAGTTGATACAGCAGCAG 7094 ||||| |||| || || || ||||| | | | ||| |||||||| || ||||| | Sbjct 10394 TCCCCACAAGAATAA-TAAAGAGTGTCCCATACTATTAGCTGGAGTTGAAACTGCAGCTG 10336 Query 7095 TAAGGAAATTACATCCCTCAAGATACGAAGAAGCAATCCCGTGAGTGTACCAGCTCGTGA 7154 | | ||| ||||| || || | || ||| || | || ||||| ||||| || | Sbjct 10335 TTAAGAAGTTACAACCTTCTAAGTATGAACTTGCTAAACCATGAGTATACCAAGATGTTA 10276 Query 7155 CGAAAGTTGTGCCCGTGAGCCAACCGCCCAGTGCCAGGTA--AGCAGTAGGGAACAGAAG 7212 | ||||| || || || ||||| || || | || || || |||| ||| | || | Sbjct 10275 CAAAAGTAGTTCCTGTAAGCCATCCACCTAAGGCAAGATATGAGCA--AGGCAGTAGCAA 10218 Query 7213 AAGACCTGACCAACCAACAAAAACGAACCTATCACGCTTAAGCCAGTCATCGAGTACATC 7272 | ||| |||||||| | ||||| || | || | ||| | ||||||||| | | ||| Sbjct 10217 TAAACCAGACCAACCTATGAAAACAAAACGGTCTCTCTTCAACCAGTCATCTATAAGATC 10158 Query 7273 AAACCACCC 7281 |||||| || Sbjct 10157 AAACCATCC 10149 >seq181 Length=69431 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 176121 ATGGGCAGGGAGGGATTTGAACCCCCGTAGGCAGAGCCAGCGGATTTACAGTCCGCCTCC 176180 |||||| | | ||||||||||| |||||||| | ||| ||||||||||||||| | || Sbjct 19564 ATGGGCCGAGTAGGATTTGAACCTACGTAGGCATAACCAACGGATTTACAGTCCGTCCCC 19505 Query 176181 ATTAACCACTCGGACACCTACCC 176203 ||||||||||||| || | |||| Sbjct 19504 ATTAACCACTCGGGCATCGACCC 19482 >seq1212 Length=27810 Score = 84.2 bits (92), Expect = 3e-11 Identities = 69/83 (83%), Gaps = 1/83 (1%) Strand=Plus/Plus Query 177352 GAAATAGGACGAGCGGGACTTGAACCCGCACGATCTTTACAATCAACAGATTTTAAGTCT 177411 |||||||| | ||||||||||||| |||| | || ||||||||||||||||||| Sbjct 7214 GAAATAGGGGCAAAGGGACTTGAACCCTTACGACCGATATGATCAACAGATTTTAAGTCT 7273 Query 177412 GGTGTGTCTACCAATTCCACCAC 177434 | |||||||||| |||||||||| Sbjct 7274 GTTGTGTCTACC-ATTCCACCAC 7295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622101361448160