Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq216 172 7e-38 seq1059 136 5e-27 seq963 98.7 1e-15 seq2016 87.8 2e-12 >seq216 Length=49752 Score = 172 bits (190), Expect = 7e-38 Identities = 291/412 (71%), Gaps = 16/412 (4%) Strand=Plus/Minus Query 12702 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 12761 |||||||| ||||||||||| || | ||| ||| || | ||| ||||||||| ||| Sbjct 1355 CGATCAAATCGACCTGGGCGCAGCAACGCGCGGTCCAGCACATCGGAGCGGTTCGTTGCC 1296 Query 12762 GCGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAG---TTGA 12818 |||||||| | ||| || | | || || || |||||||| || ||| |||| Sbjct 1295 GCGATGACGATGATTCCGCTGTTCGCCTCAAACCCGTCCATCTC---CACGAGCATTTGA 1239 Query 12819 TTGATGGTTTGTTCACGTTCATCATT--CGCGGGC-ATACCACCCGCACTGCGTTGCTTA 12875 || | ||||| |||||||| ||||| | | ||| ||||| || | ||| || Sbjct 1238 TTCAGCGTTTGCTCACGTTCGTCATTTCCACCGGCGATACCG---GCTCCGCGCTGGCGT 1182 Query 12876 CCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTT-GATTTTCACGGGCAACTTC 12934 ||||| ||||| |||||||||||||||| ||| || ||| | ||||| | | Sbjct 1181 CCGACCGCGTCGATTTCGTCAATGAAAATGATGCAAGGTGCGTTTTTCTTTGCGTTCGAG 1122 Query 12935 AAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGC 12994 ||| | ||| ||||| | | || || ||||||||||||||||||||||| | || | | Sbjct 1121 AAA-AGATCACGCACACGCGAAGCGCCCACACCCACAAACATCTCCACAAACTCGGAGCC 1063 Query 12995 GGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCT 13053 | | || | || |||||||||| || ||||| || | ||| || || || ||||||| Sbjct 1062 TGCA-ATCGAGAAGAAGGGGACGCCGGCCTCACCGGCCACGGCGCGCGCAAGCAGGGTCT 1004 Query 13054 TCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACCACGTGGGATCCTGGCACC 13105 | ||||| ||||| || | |||| ||||||| ||||| |||| || Sbjct 1003 TACCCGTTCCTGGAGGACCTTCCAGAATCACACCACGCGGGATTTTGGCGCC 952 >seq1059 Length=17963 Score = 136 bits (150), Expect = 5e-27 Identities = 381/584 (65%), Gaps = 3/584 (1%) Strand=Plus/Plus Query 116413 TTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCA 116472 |||||| || || || || || ||||||| || ||||| | ||| || | Sbjct 15833 TTGACAAACATATTCAGCGCAATGGACGCCAAGTTGCACACGGCCACCTCGTCAGGTGCT 15892 Query 116473 GTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGA 116532 |||||||| || ||||| || |||||||| || || ||||| | ||||| || Sbjct 15893 GTGTACTCAATGATTTCTGTGCACAAATTGCTGCTGCGGATTGTGCCGAGGTTCTGCTGG 15952 Query 116533 TTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGG 116592 || ||||||| ||| ||||||||||| ||||| || || || || ||||| | || Sbjct 15953 TTCGACTTTGAGTTGGCGGCATCCTTGTACAGCATGTACGGTGTGCCGGTCTCAATCTGC 16012 Query 116593 GACTTGAGAATAGCCTTCCATACATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCC 116652 || | || | || ||| | | | || || | || || || || || || Sbjct 16013 GAGTCAAGCACCGCAAACCACAGTTTGCGCGCCGGAATCGTCTCGCGCGCGCGGCCTTCG 16072 Query 116653 TCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCCTCTGAGAGCCCTGGT 116712 | |||||||| ||||| || ||||| || || |||| | || | || || || Sbjct 16073 TTTTCGTACTTGGTGTACAGCGCCTCGAAGTCCGGACCCCACGTGTCGCACAGTCCCGGC 16132 Query 116713 GCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGG 116772 || | | || |||||||| ||| || || ||||||| || ||||||||||| ||| Sbjct 16133 GCTTCGTTGGGGCAGAAGAGGCTCCACTGTCCGTCCTCCTCCACTCGCTTCATGAACAGG 16192 Query 116773 TCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTG 116832 || || |||| ||||| | |||||||| || || | ||||| | || || || Sbjct 16193 TCCGGCGTCCACAGCGCGTAAAAGAGATCACGCGCACGTGACTCTTCCTTGCCGTGGTTC 16252 Query 116833 AGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATT 116892 |||| || | || || | || || ||||||||||| || | ||| || | Sbjct 16253 TTGCGCAGGTCGAGGAACTCAAAAATGTCGGCGTGCCACGGCTCAATGTAGCAGGCAAAC 16312 Query 116893 GACCCCTTGCG---ACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGA 116949 | || ||||| || ||| |||| | || || | ||| || | || | || || Sbjct 16313 GCACCTTTGCGCTTACCACCGCCCTGATCCACGTAACGCGCTGTGTCATTGTACACTCGC 16372 Query 116950 AGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAAT 116993 |||||||| | || || | || ||||||||| |||||||| Sbjct 16373 AGCATTGGTACAATGCCGTTTGACGAGCCATTTGTGCCCCGAAT 16416 Score = 89.7 bits (98), Expect = 6e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 115858 TGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTG 115917 ||||| || ||||| | ||||| |||||||| ||| | | |||||||| | |||| Sbjct 15245 TGCTTGTTAACAACGGCGAACTCGCCCGCGAGAACGCGGCGCGTGTAGATGTTTGACGTG 15304 Query 115918 TATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGT 115977 || || ||||||||||| |||||||||| || || | ||||| || || |||||||| Sbjct 15305 TACGGTTCAAAGCACTCGTTGTTACCCAGAATCTGCGACGTGGAAGCAGTCGGCATGGGC 15364 Query 115978 GC 115979 || Sbjct 15365 GC 15366 >seq963 Length=27641 Score = 98.7 bits (108), Expect = 1e-15 Identities = 305/466 (65%), Gaps = 7/466 (2%) Strand=Plus/Plus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || ||| ||||||||||| || || || || ||||| ||| || || Sbjct 17250 GCAAAGTCGCAGTGCAGACCCTCGTCTCGCGAAATCAGCTCATTGCTGAACGTGAGTCCA 17309 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 |||||||| || |||||||| | ||| || || || || || ||||| ||||| || || Sbjct 17310 GGCATGAGCCCGCGCTTCTTGAGCCAAAAGATTGCGCAGAAAGAGCCGGAGAAAAAAATT 17369 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGA-GCGGGACTTTGTATCAAA 127698 || || || || ||||| | |||||||| |||||||| ||| | | || | Sbjct 17370 CCTTCGACTGCGGCAAACGCGACCAGACGCTCTGCAAAGGATGCGTG-CGATG---AGAT 17425 Query 127699 CCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTC-TGGATCGCTTCAA 127757 |||| ||| ||||||| |||||||||| | || |||| || | || || | | Sbjct 17426 CCACGTCAAAGCCCACTCGGCCTTTTTCTTCACGCA-GGGAATCTCTTCCATAGCGTGGA 17484 Query 127758 AGAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTT 127817 |||| | |||||||| ||| || | |||| | || ||||| || || |||| Sbjct 17485 AGAGATGGTTCTTTTCCTCTGGGTCGGACACGTACGTGTCAATGAGCAAGGAGTACGTTT 17544 Query 127818 CGCCGTGGACCATTTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCT 127877 | ||||| | || | | ||| | | || || |||||||||| |||| Sbjct 17545 CCGAGTGGATGTTCTCCATCGCGATCTGGAAGCCATAAAAGCAGCGCGCTTCCGGGATCT 17604 Query 127878 GTACCTCATCGGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAA 127937 | || || | | || | | |||||| | ||| ||||| || || | || | Sbjct 17605 GGACGTCCTTCGAGAAGCGCTCGCACAAATTCTCCAGAACGATTCCGTCCGATGCGGCGA 17664 Query 127938 AAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCAG 127983 | || || || | || ||| ||||| | ||| |||| || ||| || Sbjct 17665 AGAAGGCGAGCACATGCTTGATGAAGTGCTGCTCATCCTTGTTGAG 17710 >seq2016 Length=8234 Score = 87.8 bits (96), Expect = 2e-12 Identities = 192/285 (67%), Gaps = 2/285 (1%) Strand=Plus/Minus Query 175925 GCATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGATA 175984 || ||||| || || || || || || ||||||||| | ||| |||| | || || Sbjct 5407 GCGTCTTTACCTCCTTGCAGCCGGGTTCCGAATTGACCAGACGGCACAAGCAAGTTAATG 5348 Query 175985 TTGTTTGAGCCCATATAGTCATTCGCCAACTTGACAATCGTATCCGCGAGGGAGACTTCA 176044 ||||| | || | | ||| | ||| | | ||| ||||| | ||| || | || Sbjct 5347 TTGTTGGCACCGACAAAGTTCTGCGCAAGCCCGACGATCGTCGACATGAGTGAAGCCTCG 5288 Query 176045 CCGTGATGGTAGGCCGACTTGTCCGCCACATACGCCGCCAACTGCGCCACCTTCATCTCA 176104 |||||||| || |||| | |||| |||||| | || | |||||||||||| || ||| Sbjct 5287 CCGTGATGATAAGCCGCATGCTCCGACACATAACCGGCGAGCTGCGCCACCTTAATTTCA 5228 Query 176105 TCCTTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAAGGCTTGAGGCCG 176164 |||||| || | | ||||||||| | | ||||| | ||| ||||| || || Sbjct 5227 GTCTTGAGTTTTCTCTTGAAGCACGCGAAGAGCACCTTGCGCTGGCTGGGCTTTAGCCCA 5168 Query 176165 TCGGCCATGTGTGCGATGGAACGCTTCAAGTCTGCCAAGCTGAAA 176209 ||| | | | | ||||| |||| ||||| ||||| |||| Sbjct 5167 TCGACAACGCTAGGAATGGAGCGCTCGTTGTCTG-CAAGC-GAAA 5125 Score = 84.2 bits (92), Expect = 3e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 176818 CTTCCCGCGGAGAGGGAACACACCGTAGTGATCACGACCAACCACAGAGAGACCAGCAAC 176877 ||| ||||| || |||||||| || |||| ||| ||||| | || || || || | || Sbjct 4502 CTTGCCGCGAAGCGGGAACACGCCATAGTAATCGCGACCGATGACCGAAAGGCCTGAAAT 4443 Query 176878 TGCGAGGGTCTTCGCGGAATCACCCTCCGTCACGATGAGCGTACACTTTCCAGATTGTGC 176937 ||||| | || || || ||||||||||||| || | || ||||| | || | Sbjct 4442 CGCGAGCGCTTTGGCAGAGTCACCCTCCGTCAGAATCAAAGTGCACTTGCAGGACTCGCG 4383 Query 176938 CGTCCCCGCCTTGTTCGCATCGTCCAACTTGGGAATACCAGTAATTTTGGACTTACGAGC 176997 | || |||||||| |||||||||| || || | ||| || ||| ||| | Sbjct 4382 AGAGCCGGCCTTGTTTGCATCGTCCAGTTTAGGCACGCCAAGAACCTTGATCTTCTTGCC 4323 Query 176998 ACCATCTGTCTTCTTGAGTTCCTTCATCTCCTTGAACTT 177036 || |||||||| || |||||| || ||||||||| Sbjct 4322 GCCGTCTGTCTTGGACAGCTCCTTCTCCTGCTTGAACTT 4284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613484086116240