Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq1059 127 3e-24 seq963 116 6e-21 >seq1059 Length=17963 Score = 127 bits (140), Expect = 3e-24 Identities = 158/214 (74%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 203849 GTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCCGGTCTTTAGG 203908 ||||||||||| || || | || || | | | | || || ||||| |||||||| ||| Sbjct 14912 GTGAACTGAATCGCATTGGCAGCGGGACGGGTGCGCAAGTAATACATACCGGTCTTGAGG 14971 Query 203909 CCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATG 203968 ||| | ||| ||||| | ||||||||| ||||| |||| |||||||| | ||||| Sbjct 14972 CCCAGTTTCCATCCGTAAAAGTGCATGGAGGACAGCTTGCCTGCGTTGGGGGCAGCCATA 15031 Query 203969 TGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCATATTGAT 204027 || | |||| | ||||||||||||| || ||||| || || || ||||| || | Sbjct 15032 TGCACATTCAAGCTCATGCTTTGGTCGATG-AACGCGCCACGGTCGGCCGCCATCTTCAA 15090 Query 204028 AATGGTCTTCTGCGAAATCTCCCACACCGTCTTG 204061 | |||||||||||||| ||||| || || ||| Sbjct 15091 CAATGTCTTCTGCGAAATTTCCCAAACGGTTTTG 15124 >seq963 Length=27641 Score = 116 bits (128), Expect = 6e-21 Identities = 134/178 (75%), Gaps = 2/178 (1%) Strand=Plus/Plus Query 159915 ACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACA 159974 ||| |||||||||||||||||||||||| |||||||| || || || | ||| ||| | Sbjct 17239 ACAAGAGGCACGCAAAGTCGCAGTGCAGACCCTCGTCTCGCGAAATCAGCTCATTGCTGA 17298 Query 159975 TGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCA-AAAGCACCG 160033 |||| || ||||||| ||| ||| ||||||||||| || | |||| |||| ||| Sbjct 17299 ACGTGAGTCCAGGCATGAGCCCGCGCTTCTTGAGCCAAAAGATTG-CGCAGAAAGAGCCG 17357 Query 160034 CTAAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGT 160091 ||||| || || || || || |||||||| || || | ||| |||| || |||| Sbjct 17358 GAGAAAAAAATTCCTTCGACTGCGGCAAACGCGACCAGACGCTCTGCAAAGGATGCGT 17415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795125242527840