Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq1200 158 1e-33 seq970 129 7e-25 seq2751 107 2e-18 seq2049 93.3 5e-14 >seq1200 Length=24482 Score = 158 bits (174), Expect = 1e-33 Identities = 174/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 46366 GCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGA 46425 |||||| | | |||| ||||| || | || |||||| || || |||||||| || Sbjct 18668 GCCTCCGCGCAGGCGCAGCACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCCGA 18727 Query 46426 TAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGG 46485 || |||||| |||| || |||||||| || ||||| |||||||||||||| || | ||| Sbjct 18728 GAGCGTGCGCCCGTCCTCTAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGATCTGGCGG 18787 Query 46486 CACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCA 46544 | || |||||||||| |||||| ||||| ||| | | | |||||| || |||| Sbjct 18788 GATGCCCTCCTTGTCCTGAATCTTCGCCTTGA-CGTTGTCGATCGTGTCCGAGGACTCCA 18846 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || | |||||| || |||||||||||||| || |||||||| ||||| Sbjct 18847 CCTCGAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACAAAGATCTGCAT 18895 >seq970 Length=23808 Score = 129 bits (142), Expect = 7e-25 Identities = 161/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| |||| ||||| || |||||| ||||| || ||||| || || || || | Sbjct 22517 ACGCAGAACCAAGTGCAAGGTCGACTCCTTCTGGATGTTATAGTCTGACAGTGTTCGTCC 22576 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| || ||||||||||| || || ||||||||||||||||| | ||| | || ||||| Sbjct 22577 GTCCTCCAGCTGCTTGCCCGCAAAAATCAAGCGCTGCTGGTCTGGCGGGATGCCTTCCTT 22636 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 ||| |||||| ||||| | | | ||||| || || || |||| |||||| Sbjct 22637 GTCTTGAATCTTCGCCTTGACATTATCGATGGTGTCCGAGGACTCGACCTCCAACGTGAT 22696 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTGC 46598 || |||||||| || || || || || || ||||| |||| Sbjct 22697 TGTCTTGCCCGTGAGGGTCTTGACGAAAATCTGCATGTTGC 22737 >seq2751 Length=18403 Score = 107 bits (118), Expect = 2e-18 Identities = 112/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 46447 CTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGAT 46506 |||||| |||||||| |||| |||||||||||| | ||| | || |||||||||| || Sbjct 18403 CTGCTTTCCGGCGAAAATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGAAT 18344 Query 46507 CTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCC 46566 ||| ||| | | | | ||||||| ||| ||||| || | ||||||||| || || Sbjct 18343 CTTGGCCTTCACATTATCAATCGTGTCGGACGACTCCACCTCGAGCGTGATGGTCTTTCC 18284 Query 46567 CGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||||||| || ||||| || ||||| Sbjct 18283 GGTCAGCGTCTTCACAAAAATCTGCAT 18257 >seq2049 Length=21382 Score = 93.3 bits (102), Expect = 5e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| ||||| || | || |||||| ||||| |||||||| || || ||||| || Sbjct 21267 CGCAGCACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCTGACAGCGTGCGGCCG 21326 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTC 46494 || || |||||||| |||||||| |||| |||||||||||| | ||| | || ||| Sbjct 21327 TCCTCCAGCTGCTTTCCGGCGAAAATCAGGCGCTGCTGGTCCGGCGGGATGCCCTC 21382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565217104643280