Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq963 302 4e-77 seq970 125 7e-24 seq1200 118 1e-21 seq2049 100 3e-16 >seq963 Length=27641 Score = 302 bits (334), Expect = 4e-77 Identities = 631/924 (68%), Gaps = 41/924 (4%) Strand=Plus/Plus Query 132550 TAAAAGTCCGCATCCAAAGTAAA------GGTGTCGTCCTTGGCAAACATCACGCCAAAT 132603 ||||| || || |||| ||| || || ||| | |||| | |||||| || Sbjct 16896 TAAAAATCAGCGTCCAGAGTGAACACCTTGGAGTCCTTCTTGTCGTCCATCACACCGGCC 16955 Query 132604 TTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGC 132663 ||||| || || ||||| ||||||||||| || || || || || | ||||| ||| Sbjct 16956 TTTTGGTACTCTCCCACACGCTTCTCAAAAAAGTTGGTCTTCCCTTCGAGCGAAATCAGC 17015 Query 132664 GTCATAAAATCCAAGGGGTTGGCTGTGTTGTAG--TGCTTGGTGCCGATCAGGTCGAC-- 132719 ||| | || || |||||| | || ||| | || ||||| ||| ||| Sbjct 17016 TCCATCCAGTCAAACGGGTTGCGGGCGTGGTAAACTTTTTCGTGCCCG--AGG--GACTG 17071 Query 132720 GAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAG 132779 |||||| | |||||| || ||||| || ||||||| ||| ||||| || | || | Sbjct 17072 GAGCAGGCGGTCGGCGACAAACTCAATATATTGCGCCATAAGTTCGCTGTTCATCCCGAT 17131 Query 132780 CA-GACGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGA 132838 || | ||||| |||||||| || | | ||| | |||| || || ||| |||| Sbjct 17132 CAAGTCGCAC-GGCAGCGCGTCAATAATAAATTCCTTCTCGCACGCAACAGCGCTCGTGA 17190 Query 132839 CGATTTCCCTAACGCGCGCCG---CGCTCGGCCGTTGCACC----AAATGCTTGAACATC 132891 ||| | | || ||| || ||||| | | | | | ||||| | ||| Sbjct 17191 TGATGTT------GAGCACCGTTTCGTTCGGCAGCTTCTGCGGGCACATGCT-GTACAAG 17243 Query 132892 AAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTC 132951 | ||| ||||||||||| |||| |||||||| | ||||| || || |||||||| || Sbjct 17244 AGGCACGCAAAGTCGCAGTGCAGACCCTCGTCTCGCGAAATCAGCTCATTGCTGAACGTG 17303 Query 132952 AAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAG 133011 | || |||||||| ||||| || ||||||||||| || ||| |||| ||| || || Sbjct 17304 AGTCCAGGCATGAGCCCGCGCTTCTTGAGCCAAAAGATTGCGCAGAAAGAGCCGGAGAAA 17363 Query 133012 AAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTG 133071 || | || ||||| || || || || ||||| ||||| | || | || | | || Sbjct 17364 AAAATTCCTTCGACTGCGGCAAACGCGACCAGACGCTCTGCAAAGGATGCGTGC--GATG 17421 Query 133072 GCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCG 133131 |||||| || ||||| |||||||||| || ||||| || ||| ||| || ||| Sbjct 17422 A-GATCCACGTCAAAGCCCACTCGGCCTTTTTCTTCACGCAGGGAATCTCTTCCATAGCG 17480 Query 133132 TTCAACAAACGGAGTTTCTCTTCCGA-GGAACG--CACGTAGGTGTCGATGAGGGTCGAA 133188 | || | | || |||| |||| || || |||||| ||||| ||||| || Sbjct 17481 TGGAAGAGATGG---TTCTTTTCCTCTGGGTCGGACACGTACGTGTCAATGAGCAAGGAG 17537 Query 133189 TACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCG 133248 ||| |||||||||| | ||||||||| ||||| || ||||| |||||||| ||||| || Sbjct 17538 TACGTTTCCGAGTGGATGTTCTCCATCGCGATCTGGAAGCCATAAAAGCAGCGCGCTTCC 17597 Query 133249 ACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTG 133308 | ||| || || | | ||| |||||| || ||| || ||||| ||||| Sbjct 17598 GGGATCTGGACGTCCTTCGAGAAGCGCTCGCACAAATTCTCCAGAACGATTCCGTCCGAT 17657 Query 133309 GCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTC- 133367 |||||||| ||||| ||||| ||||||||||| || |||| | | ||| |||| || Sbjct 17658 GCGGCGAAGAAGGCGAGCACATGCTTGATGAAGTGCTGCTCATCCTTGTT-GAGCGATCG 17716 Query 133368 CCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGC 133427 ||| | || |||| | |||||| | |||||| ||||||| || ||||||||| Sbjct 17717 CCACTGCAGCAAGTCCGAGCTCAGGTCGATTTCCTCGGCGGTCCAGAAGGACGCCTCGTG 17776 Query 133428 TTTTTTGTACATACTCCACATGTC 133451 || |||||||| |||| ||||| Sbjct 17777 CTTCTTGTACATTTTCCAGATGTC 17800 >seq970 Length=23808 Score = 125 bits (138), Expect = 7e-24 Identities = 169/233 (73%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || || ||||||||||| || ||||| | || |||||| || Sbjct 22735 AACATGCAGATTTTCGTCAAGACCCTCACGGGCAAGACAATCACGTTGGAGGTCGAGTCC 22676 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GA 38359 | |||| | | | | | || | || || | ||||| || || | ||||||| || Sbjct 22675 TCGGACACCATCGATAATGTCAAGGCGAAGATTCAAGACAAGGAAGGCA-TCCCGCCAGA 22617 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||||| | |||| |||||||| |||||||| |||| || || || ||||| Sbjct 22616 CCAGCAGCGCTTGATTTTTGCGGGCAAGCAGCTGGAGGACGGACGAACACTGTCAGACTA 22557 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472 |||||||| ||||| |||| |||| ||||| |||||| || | || |||| Sbjct 22556 TAACATCCAGAAGGAGTCGACCTTGCACTTGGTTCTGCGTCTGCGCGGTGGCC 22504 >seq1200 Length=24482 Score = 118 bits (130), Expect = 1e-21 Identities = 169/233 (73%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || ||||| |||||||| || ||||| |||| || ||| || | Sbjct 18895 ATGCAGATCTTTGTGAAGACGCTGACGGGCAAGACGATCACGCTCGAGGTGGAGTCCTCG 18836 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361 |||| | | |||| | || | || || | ||||| ||||| || |||||| || | Sbjct 18835 GACACGATCGACAACG-TCAAGGCGAAGATTCAGGACAAGGAGGGCAT-CCCGCCAGATC 18778 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| | || | |||||| || ||||| || |||| |||||| ||| ||||||| Sbjct 18777 AGCAGCGCTTGATCTTCGCGGGGAAGCAGCTAGAGGACGGGCGCACGCTCTCGGACTACA 18718 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCCGC 38474 |||| || ||||| | || || || ||||||||||| || | || ||| || Sbjct 18717 ACATTCAGAAGGAGTCCACCCTCCACTTGGTGCTGCGCCTGCGCGGAGGCGGC 18665 >seq2049 Length=21382 Score = 100 bits (110), Expect = 3e-16 Identities = 94/117 (80%), Gaps = 2/117 (2%) Strand=Plus/Minus Query 38343 GAGGGAATTCCCGCCG-ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGA 38401 ||||| || ||||||| |||| ||||| || |||| ||| || || |||||||| |||| Sbjct 21382 GAGGGCAT-CCCGCCGGACCAGCAGCGCCTGATTTTCGCCGGAAAGCAGCTGGAGGACGG 21324 Query 38402 GCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| || |||||||||||||| ||||| ||||||| || ||||||||||| Sbjct 21323 CCGCACGCTGTCAGACTACAACATCCAGAAGGAGTCGACGCTTCACTTGGTGCTGCG 21267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500153955989760