Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq189 118 4e-21 seq225 84.2 9e-11 >seq189 Length=13781 Score = 118 bits (130), Expect = 4e-21 Identities = 141/191 (74%), Gaps = 9/191 (5%) Strand=Plus/Plus Query 451322 GCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCA 451381 ||||| || || ||||| || ||||| || ||| | ||| ||||| | ||||| |||| Sbjct 11503 GCAGTGATAACAGTTCCAGCCTATTTTAACGATTCTCAAAGGCAATCTACTAAGAATGCC 11562 Query 451382 GGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTA 451441 || | || ||||| ||| |||| ||||| || | ||||| |||||||| ||| | ||| Sbjct 11563 GGCAAGATAGCTGGCTTAGATGTACTTCGCATAGTCAATGAGCCTACAGCTGCTTCACTA 11622 Query 451442 GCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTT 451501 ||||||||||| | | || ||| | || ||| |||| || || |||||||| Sbjct 11623 GCATATGGACT-------TGATAAAAAAAATAATGAAACAATACTT--GTTTTTGATTTA 11673 Query 451502 GGTGGAGGAAC 451512 ||||||||||| Sbjct 11674 GGTGGAGGAAC 11684 Score = 114 bits (126), Expect = 5e-20 Identities = 202/295 (68%), Gaps = 12/295 (4%) Strand=Plus/Plus Query 451985 AGCGTAAATCCTGATGAAGCTGTTGCATATGGTGCTGCAGTTCAAGCAGCTATTCTAACA 452044 ||||| ||||||||||||| |||||| |||||| || |||||||||| | | ||| | Sbjct 12166 AGCGTTAATCCTGATGAAGTTGTTGCGATTGGTGCAGCTGTTCAAGCAGGTGTACTAGCT 12225 Query 452045 GGTTCAGATGATGAAAAATTAGGAGATATTCTGTTAGTAGATGTAACACCTCTATCTCTT 452104 ||| || ||| |||||| || || |||||||||| ||| ||||| | Sbjct 12226 GGT-----------GAAGTTA-AAGATATACTTCTACTAGATGTAACTCCTTTATCTTTA 12273 Query 452105 GGAGTTGAAACAGCTGGTGGAATGATGACTAATTTAATTAAACGAGGAACTTCTATTCCT 452164 || ||||||||| |||||| | ||||| || | |||| || || ||||||| Sbjct 12274 GGTGTTGAAACATTAGGTGGAGTAATGACAAAGATTATTACTAGAAATACAACTATTCCA 12333 Query 452165 TGTAAAAAGAGTCAAACATTTAGTACAGCAAGTGATAACCAACCAGGTGTAACTATTCAA 452224 |||||| || |||| |||||| ||||| |||||| ||| ||||| Sbjct 12334 ACTAAAAAATCAGAAGTATTTTCAACAGCAGTAGATAATCAACCAAATGTTGAAATTCAT 12393 Query 452225 GTGTTTGAAGGAGAACGTGCAATGACACGAGATAATAATAAACTAGGAGAATTTA 452279 ||| || |||||||| | | | | | ||||||||| | |||||| ||||| Sbjct 12394 GTGCTTCAAGGAGAAAGAGAATTTGCTAAAGATAATAAAAGCCTAGGAACATTTA 12448 >seq225 Length=37100 Score = 84.2 bits (92), Expect = 9e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 451331 ACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATT 451390 || ||||| || |||||||||||||| || || || || || |||||||| ||||| ||| Sbjct 34988 ACCGTTCCGGCGTATTTCAATGATGCTCAGCGACAGGCCACCAAAGATGCTGGACAGATT 35047 Query 451391 GCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGG 451449 || ||| | ||||| | || ||||| || || || || || || || || || || || Sbjct 35048 GCCGGTCTCAATGTCATGCGTATTATCAACGAGCCCACCGCGGCGGCGCTCGCGTACGG 35106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975642103929512