Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq189 185 7e-41 seq1055 86.0 5e-11 >seq189 Length=13781 Score = 185 bits (204), Expect = 7e-41 Identities = 272/386 (70%), Gaps = 12/386 (3%) Strand=Plus/Minus Query 517275 TACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTG 517334 ||||||| | ||| | ||| ||||| ||||||||||| || || | ||| |||| ||| Sbjct 12523 TACCATTAGAATCTATATCGAATGTAACTTCAATTTGCGGCACACTTCTTGGAGCTGGTA 12464 Query 517335 GGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCAC 517394 || || || || |||||||||| || | ||||||||||||| |||| || ||| | Sbjct 12463 AAATTCCATCTAACCTAAATGTTCCTAGGCTTTTATTATCTTTAGCAAATTCTCTTTCTC 12404 Query 517395 CCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTGG 517454 | | | | || || ||| | |||||||||| |||| ||||||| | Sbjct 12403 CTTGAAGCACATGAATTTCAACATTTGGTTGATTATCTACTGCTGTTGAAAATACTTCTG 12344 Query 517455 ATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCTGCTG 517514 |||||||| ||||| ||||| |||||| |||||| || ||||| | |||||| || Sbjct 12343 ATTTTTTAGTTGGAATAGTTGTATTTCTAGTAATAATCTTTGTCATTACTCCACCTAATG 12284 Query 517515 TTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTCAT 517574 |||| | ||| | ||| | |||||| |||| |||| | ||||| | || | Sbjct 12283 TTTCAACACCTAAAGATAAAGGAGTTACAT---CTAG---------TAGAAGTATATCTT 12236 Query 517575 CAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAG 517634 | || |||| | || | | ||||||||| ||| |||||| |||||| ||||||||| Sbjct 12235 TAACTTCACCAGCTAGTACACCTGCTTGAACAGCTGCACCAATCGCAACAACTTCATCAG 12176 Query 517635 GATTAACAGTTTCATTTAGTTTTTTA 517660 ||||||| ||| ||| ||| |||| Sbjct 12175 GATTAACGCTTTGATTAGGTTCTTTA 12150 Score = 123 bits (136), Expect = 2e-22 Identities = 197/279 (71%), Gaps = 8/279 (3%) Strand=Plus/Minus Query 518027 TCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCA 518086 |||||||| || || ||||| | |||| |||||| |||| | || | ||| | ||| Sbjct 11774 TCAAAATCATCTCCACCCAAGTGGGTATCTCCTGATGTAGATAAAACCTCGAATACGCCA 11715 Query 518087 TCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACA 518146 ||| ||| || | | ||| ||| ||||| ||||| | |||||||| ||||| Sbjct 11714 TCTCCAACTTCTAATAATGATACGTCAAATGTTCCTCCACCTAAATCAAAAACAAGTA-- 11657 Query 518147 TTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCA 518206 | |||| || | || |||||||||| ||||| || | | |||||| || || ||| Sbjct 11656 -TTGTTTCATTATTTT---TTTTATCAAGTCCATATGCTAGTGAAGCAGCTGTAGGCTCA 11601 Query 518207 TTAATAATTCTCAAAACAT-TAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCT 518265 || | || | | |||| |||| ||||| || | || |||| ||||| | ||| || Sbjct 11600 TTGACTATGCGAAGTACATCTAAG-CCAGCTATCTTGCCGGCATTCTTAGTAGATTGCCT 11542 Query 518266 TTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 518304 ||| |||||||||||||| || ||||| || || || || Sbjct 11541 TTGAGAATCGTTAAAATAGGCTGGAACTGTTATCACTGC 11503 >seq1055 Length=10011 Score = 86.0 bits (94), Expect = 5e-11 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 518503 ACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTT 518562 |||||| | ||| ||||| ||||| | || ||| || || || || | || | || Sbjct 7090 ACCAATCATTCGCTTTGCGTCAAACACCGTGTTGTGCGGGTTCATCGCCACCTGGTTCTT 7149 Query 518563 GGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCG 518622 || ||||| || || ||| | || || ||||| || | || || || || || || || Sbjct 7150 TGCCGCATCGCCGATGAGACGCTCCGTGTCTGTGAACGCCACGTACGACGGCGTGGTTCG 7209 Query 518623 ATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACT 518682 ||| ||||| || |||||||| || || || | |||| ||||| || || || || Sbjct 7210 ATTTCCTTGGTCGTTCGCAATGATCTCGACGCGATCATTCTGCCACACGCCCACGCACGA 7269 Query 518683 AAAAGTTGTTCCTAAATCAATACCAATAGCAA 518714 | || || || ||||||||||| | |||| Sbjct 7270 GTACGTGGTGCCCAAATCAATACCCACTGCAA 7301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780672835391884