Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq1059 165 1e-35 seq216 154 2e-32 seq963 113 6e-20 >seq1059 Length=17963 Score = 165 bits (182), Expect = 1e-35 Identities = 939/1480 (63%), Gaps = 62/1480 (4%) Strand=Plus/Minus Query 111897 ATTAGAGGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCC 111956 ||| | || |||||||| ||| | || ||| | |||||||| || || | || | | Sbjct 16416 ATTCGGGGCACAAATGGCTCGTCAAACGGCATTGTACCAATGCTGCGAGTGTACAATGAC 16357 Query 111957 ACAGCGCGCTATGTAAACCAAGCTGGGCGT---CGCAAGGGATCTATCGCAGTCTATCTT 112013 |||||||| || || | || | || || ||||| || | | || ||| || Sbjct 16356 ACAGCGCGTTACGTGGATCAGGGCGGTGGTAAGCGCAAAGGTGCGTTTGCCTGCTACATT 16297 Query 112014 GAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAG 112073 ||||| |||||||| || || | |||||||| || |||| ||||| || | || Sbjct 16296 GAGCCGTGGCACGCCGACATTTTTGAGTTCCTCGACCTGCGCAAGAACCACGGCAAGGAA 16237 Query 112074 GAGGCGCGGTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAG 112132 ||| | || ||| || |||||||| | ||| || |||| || || || ||||||||| | Sbjct 16236 GAGTCACG-TGCGCGTGATCTCTTTTACGCGCTGTGGACGCCGGACCTGTTCATGAAGCG 16178 Query 112133 AGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGA 112192 ||| |||||| || | ||| ||||| || || || | || || || || | ||| Sbjct 16177 AGTGGAGGAGGACGGACAGTGGAGCCTCTTCTGCCCCAACGAAGCGCCGGGACTGTGCGA 16118 Query 112193 TGCCGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGAC 112252 | |||| ||| || || || || ||||| |||||||| | ||| | || ||| Sbjct 16117 CACGTGGGGTCCGGACTTCGAGGCGCTGTACACCAAGTACGAAAACGAAGGCCGCGCGCG 16058 Query 112253 TGCGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGG 112312 | |||| | || || | | ||||| || | || | || || | ||||| || Sbjct 16057 CGAGACGATTCCGGCGCGCAAACTGTGGTTTGCGGTGCTTGACTCGCAGATTGAGACCGG 15998 Query 112313 TACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGG 112372 ||||| || ||||| ||||| || ||| ||| |||| || || |||| | || Sbjct 15997 CACACCGTACATGCTGTACAAGGATGCCGCCAACTCAAAGTCGAACCAGCAGAACCTCGG 15938 Query 112373 TGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGAC 112432 ||| || ||| | || ||||||||| | || | |||| || ||| Sbjct 15937 CACAATCCGCAGCAGCAATTTGTGCACAGAAATCATTGAGTACACAGCACCTGACGAGGT 15878 Query 112433 GGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATC------------- 112479 ||| ||||| ||| | || || || || || | || ||| | | Sbjct 15877 GGCCGTGTGCAACTTGGCGTCCATTGCGCTGAATATGTTTGTCAAGCAGCAACCGGACGC 15818 Query 112480 ---CAGAG-----ACAAA---GAC---ATTT---GATTATGAAAAACTCCACGAAGTTAC 112522 || || ||||| ||| ||| || |||| ||| | |||| || Sbjct 15817 CGGCACAGGCGGCACAAATCAGACCCCATTCTACGACCATGAGGCGCTCGCCAAAGTGAC 15758 Query 112523 GAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGAC 112582 || || ||| ||||| ||| | | |||||| |||| ||||| || ||| Sbjct 15757 CAAGCAGGTGACACGCAACCTGAACCGCATCATTGATGTCAATTACTACCCTGTGGAGGA 15698 Query 112583 TGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGA 112642 || || || || ||| | || || || ||||| || || || || || || || || Sbjct 15697 GGCGAAGAACTCGAACATGCGCCATCGCCCGATTGGGCTTGGGGTTCAGGGGCTAGCTGA 15638 Query 112643 TGTATTCATTCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCG 112702 || || || |||| | |||| || | |||| || | || ||||| || | Sbjct 15637 CACGTTTATCCTCATGCGCCTCCCATTCGAGAGCCACGAGGCACAAGAGCTCAAT-CGTG 15579 Query 112703 -TATATTTGAGACAATGTATCACGCCGCTCTTGAGGCGAGTTC---GGAGTTGGCAGAGG 112758 ||| || ||||| || || || || |||||| ||| |||| |||| | | Sbjct 15578 ATATCTTCGAGACGATTTACTTTGCTGCGTGTGAGGC---TTCAATGGAGCTGGCGCAAG 15522 Query 112759 TTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTG 112818 | ||| | |||||||| |||| || ||||| || ||| |||| ||||| |||| Sbjct 15521 AGCACGGTTCGTATGAAACATTTGCTGGCTCTCCCGCATCAGAAGGCAAACTTCAGTTTG 15462 Query 112819 ATATGTGGGAAGGTGAGACCAAGCTTCAC-----TACGACTGGGACGCTCTCAAGGAACG 112873 || |||||| | ||| || || || ||||| |||| || |||||| || Sbjct 15461 ATTTGTGGGGCG-TGACGCCG-GCGTCCGGGCGATACGATTGGGCAGCGCTCAAGCAAAA 15404 Query 112874 CATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCAC 112933 ||| ||| | || | || ||| || ||| | || || ||||| || || ||||| Sbjct 15403 AATCCTTGAGCACGGCTTGCGCAACTCGCTCTTGGTAGCGCCCATGCCGACTGCTTCCAC 15344 Query 112934 CGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTATCTGAG 112993 | || || ||||||| || || ||||||||||| |||||| | |||||||| | | Sbjct 15343 GTCGCAGATTCTGGGTAACAACGAGTGCTTTGAACCGTACACGTCAAACATCTACACGCG 15284 Query 112994 AAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCATCTCGTGGATGACCT-CAAAG 113052 | |||||||| ||||| | |||| ||||||||| | || ||| || || || Sbjct 15283 CCGCGTTCTCGCGGGCGAGTTCGCCGTTGTTAACAAGCATTTGCTGAGTGATCTGCAGAG 15224 Query 113053 AGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCATGGT-GAAAGCGGGTGGTTCCATT 113111 |||| || ||| ||| | | |||| | || | | || | |||||| | Sbjct 15223 -TCTTGGCCTTTGGAACAATGCGACGAAGAACAAGATCATCGCAAAC-AATGGTTCAGTA 15166 Query 113112 CAAAATATTGTGGATATTCCAGATGAAAT-TAAGAAGTTGTACCGCACAGTTTGGGAAAT 113170 |||| | ||| ||||| | ||| | ||| || ||| || ||||||||||| Sbjct 15165 CAAAGCCTGACGGAGATTCCGGCTGAGCTGCGTGAACTT-TACAAAACCGTTTGGGAAAT 15107 Query 113171 CAAGATGAAGGATGTCATTG-ACATGGCCGCAGATCGTGGTCGC-TTCATTGATCAAAGT 113228 | ||| || | ||| | ||||| || || ||||| ||| ||||| || ||||| Sbjct 15106 TTCGCAGAA-GACATTGTTGAAGATGGCGGCCGACCGTGG-CGCGTTCATCGACCAAAGC 15049 Query 113229 CAAAGTATGAATCTATTCATGG-AAAGTCCAACGATGTCCAAGCTCTCTTCTATGCACAT 113287 || ||||| | |||| |||||| | |||||| || || |||||| | Sbjct 15048 ATGAGCTTGAATGTGCATATGGCTGCCCCCAACGCAG-GCAAGCTGTCCTCCATGCACTT 14990 Query 113288 GTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTATTAC 113327 ||| | ||||| ||| ||||| || || ||||||||| Sbjct 14989 TTACGGATGGAAACTGGGCCTCAAGACCGGTATGTATTAC 14950 >seq216 Length=49752 Score = 154 bits (170), Expect = 2e-32 Identities = 329/478 (69%), Gaps = 25/478 (5%) Strand=Plus/Minus Query 15885 CGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCG 15944 |||||||| ||||||||||| || | |||| || || | ||| ||| |||||||| Sbjct 1355 CGATCAAATCGACCTGGGCGCAGCAACGCGCGGTCCAGCACATCGGAGCGGTTCGTTGCC 1296 Query 15945 GCGATGACAACAATACCTGT-TTCGTTATCAAAACCATCCATCTCTGTCAAAAGC---TG 16000 |||||||| | || || | |||| ||||| || |||||||| || ||| || Sbjct 1295 GCGATGACGATGATTCCGCTGTTCG-CCTCAAACCCGTCCATCTC---CACGAGCATTTG 1240 Query 16001 GTTAATAGTTTGTTCCCGTTCATCATT--CGCTGGC-ATACCACCAGCACTGCGTTGCTT 16057 || | ||||| || ||||| ||||| | | ||| || ||| || | ||| || Sbjct 1239 ATTCAGCGTTTGCTCACGTTCGTCATTTCCACCGGCGAT---ACCGGCTCCGCGCTGGCG 1183 Query 16058 TCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGT-TGATTTTC---GCGAGCGA 16113 ||| || || || || || |||||||| | |||||| ||| | ||||| ||| ||| Sbjct 1182 TCCGACCGCGTCGATTTCGTCAATGAAAATGATGCAAGGTGCGTTTTTCTTTGCGTTCGA 1123 Query 16114 CTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTG 16173 || ||||| || |||||| ||||||||||| ||||||||||||||||| | | Sbjct 1122 ----GAAAAGATCACGCACACGCGAAGCGCCCACACCCACAAACATCTCCACAAACTCGG 1067 Query 16174 CGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGA 16232 | | | | || | || ||||||||| | ||||| || | ||| || || || || Sbjct 1066 AGCCTGCA-ATCGAGAAGAAGGGGACGCCGGCCTCACCGGCCACGGCGCGCGCAAGCAGG 1008 Query 16233 GTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTT 16292 ||||||||||| ||||| ||| | || | |||| || || || |||||||| || Sbjct 1007 GTCTTACCCGTTCCTGGAGGACCTTCCAGAATCACACCACGCGGGATTTTGGCGCCGATT 948 Query 16293 CCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATCTCTTCCAATTC-ATCTTTG 16349 | | | | ||| | | ||| ||||| | || | ||| | ||||| ||||||| Sbjct 947 TCGGTGAACCGCTCCGCCTCCTTCAGAAATTGGACGACCTCGGCTAATTCGATCTTTG 890 >seq963 Length=27641 Score = 113 bits (124), Expect = 6e-20 Identities = 122/162 (75%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 102171 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 102230 |||||||| ||||| || |||| ||||| || || || || || ||||| || || Sbjct 17410 TCCTTTGCAGAGCGTCTGGTCGCGTTTGCCGCAGTCGAAGGAATTTTTTTCTCCGGCTCT 17351 Query 102231 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 102290 |||||||| || | ||||||||||||||| || |||||||| || ||| ||| ||| Sbjct 17350 TTCTGCGCAATCTTTTGGCTCAAGAAGCGCGGGCTCATGCCTGGACTCACGTTCAGCAAT 17291 Query 102291 GAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCG 102332 ||||| || || || |||||||| || ||| || |||||| Sbjct 17290 GAGCTGATTTCGCGAGACGAGGGTCTGCACTGCGACTTTGCG 17249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620719013530080