Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq1059 183 4e-41 seq963 96.9 4e-15 seq216 95.1 1e-14 >seq1059 Length=17963 Score = 183 bits (202), Expect = 4e-41 Identities = 522/797 (65%), Gaps = 9/797 (1%) Strand=Plus/Plus Query 110284 AGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATT 110343 || ||||| ||||| | |||||||| | |||||| | ||||| || | ||| Sbjct 15848 AGCGCAATGGACGCCAAGTTGCACACGGCCACCTCGTCAGGTGCTGTGTACTCAATGATT 15907 Query 110344 TCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTG 110403 || || ||||| ||| || || || | ||||| ||| ||||| || |||||| Sbjct 15908 TCTGTGCACAAATTGCTGCTGCGGATTGTGCCGAGGTTCTGCTGGTTCGACTTTGAGTTG 15967 Query 110404 CATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCC 110463 |||||||| || |||||||| || || || || || |||| || | || | || Sbjct 15968 GCGGCATCCTTGTACAGCATGTACGGTGTGCCGGTCTCAATCTGCGAGTCAAGCACCGCA 16027 Query 110464 TTCCATACATCGGCGGCGGGGACAGTTGCGTTAGCGAGACCTTCCTCCTCGTACTTGGTG 110523 ||| | | | || || | || || ||| | ||||| | |||||||||||| Sbjct 16028 AACCACAGTTTGCGCGCCGGAATCGTCTCGCGCGCGCGGCCTTCGTTTTCGTACTTGGTG 16087 Query 110524 TACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGGGACAG 110583 |||| |||| || ||| | || || || | || ||| ||| | || ||| ||| Sbjct 16088 TACAGCGCCTCGAAGTCCGGACCCCACGTGTCGCACAGTCCCGGCGCTTCGTTGGGGCAG 16147 Query 110584 AAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATC 110643 |||||| ||| | ||| ||||||| || | ||||||||||||||| || |||||| | Sbjct 16148 AAGAGGCTCCACTGTCCGTCCTCCTCCACTCGCTTCATGAACAGGTCCGGCGTCCACAGC 16207 Query 110644 GCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAA 110703 || | || || ||||| ||| | |||||| | || ||||| ||| || || | Sbjct 16208 GCGTAAAAGAGATCACGCGCACGTGACTCTTCCTTGCCGTGGTTCTTGCGCAGGTCGAGG 16267 Query 110704 AAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACG---A 110760 || || | || || | |||||| || || | ||| || | | || || || | Sbjct 16268 AACTCAAAAATGTCGGCGTGCCACGGCTCAATGTAGCAGGCAAACGCACCTTTGCGCTTA 16327 Query 110761 CGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATT 110820 | ||| |||| | || || || |||||| ||||| | || | ||||| || | ||| Sbjct 16328 CCACCGCCCTGATCCACGTAACGCGCTGTGTCATTGTACACTCGCAGCATTGGTACAATG 16387 Query 110821 CCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATA 110880 || | || |||||||| |||| ||| | ||| ||||||| |||| | || | Sbjct 16388 CCGTTTGACGAGCCATTTGTGCCCCGAATGTAGCTCTTGGTGGCACGGATGT--TCGAAA 16445 Query 110881 TG--CATACCAATACCACCCGCCCACTTACTAATTTGTGCACA-CTCTGTGAGTGTACCA 110937 || | ||| || || || || |||| ||| || || | || | || ||| || Sbjct 16446 TGGAGAGACCGATGCCGCCGGCTGACTTGGAAATCACCGCGCAGCGCT-TCAGCGTATCA 16504 Query 110938 TAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGA 110997 || || || || ||||| ||| | || ||| | |||||||| || | ||| || Sbjct 16505 TAGATGCCTTCGATCGAGTCTTCTTTCATGGTCAGCAGAAAGCACGAGCTGAGCTGCGGG 16564 Query 110998 CGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTGGGACATC 111057 || ||||| | |||||||| | || || | ||||| |||| | ||| |||| | Sbjct 16565 CGCGGCGTGCTTGCATTGAACAAAGTCGGCGAGGCATGCGTGAAGAACTTTTGCGACAAC 16624 Query 111058 TTGTTGTATGTGTCGAG 111074 | | ||| || ||||| Sbjct 16625 ATTTCGTACGTCTCGAG 16641 >seq963 Length=27641 Score = 96.9 bits (106), Expect = 4e-15 Identities = 167/240 (70%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || || || || || || || |||||||| ||||| |||||||||||||| || Sbjct 17262 TGCAGACCCTCGTCTCGCGAAATCAGCTCATTGCTGAACGTGAGTCCAGGCATGAGCCCG 17321 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||||||||| || || ||| || || || || || || || || | Sbjct 17322 CGCTTCTTGAGCCAAAAGATTGCGCAGAAAGAGCCGGAGAAAAAAATTCCTTCGACTGCG 17381 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAAAGGT-CGAGACTTGTCGAACCACTTGAGAGCCCA 119686 || || |||| |||||||| ||||| | | || | || || |||| | | |||||| Sbjct 17382 GCAAACGCGACCAGACGCTCTGCAAAGGATGCGTGCGATG-AGATCCACGTCAAAGCCCA 17440 Query 119687 GTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAGTTGCTTCTTTTC 119746 | |||||| || | |||||| | || || || | ||| || || |||||||| Sbjct 17441 CTCGGCCTTTTTCTTCACGCAGGGAATCTCTTCCATAGCGTGGAAGAGATGGTTCTTTTC 17500 >seq216 Length=49752 Score = 95.1 bits (104), Expect = 1e-14 Identities = 290/442 (66%), Gaps = 10/442 (2%) Strand=Plus/Minus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 ||||| || ||||||||||| || | || || || | |||| ||||| || || Sbjct 1355 CGATCAAATCGACCTGGGCGCAGCAACGCGCGGTCCAGCACATCGGAGCGGTTCGTTGCC 1296 Query 11563 GCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622 || ||||| | || || | | || || |||||||| || ||| | || || Sbjct 1295 GCGATGACGATGATTCCGCTGTTCGCCTCAAACCCGTCCATCTCCACGAGCATTTGATTC 1236 Query 11623 ATCGTCTGTTCACGCTCATCGTTGGAG--GGC-ATACCACCTGCCGAACGCTTCTTACCG 11679 | ||| || ||||| || || || ||| ||||| || ||| |||| ||| Sbjct 1235 AGCGTTTGCTCACGTTCGTCATTTCCACCGGCGATACCGGCT-CCG--CGCTGGCGTCCG 1179 Query 11680 ACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGA-- 11737 || ||||| || || || ||||| | ||| || ||| ||| ||| |||||| Sbjct 1178 ACCGCGTCGATTTCGTCAATGAAAATGATGCAAGGTGCGTTTTTCTTTGC--GTTCGAGA 1121 Query 11738 AAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAG 11797 |||| ||||| |||||| || || ||||| || |||||||| || || | | | | | Sbjct 1120 AAAGATCACGCACACGCGAAGCGCCCACACCCACAAACATCTCCACAAACTCGGAGCCTG 1061 Query 11798 AACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTAC 11857 | | | |||||| || | |||||| || | ||| || || || || ||||||| Sbjct 1060 CAATCGAGAAGAAGGGGACGCCGGCCTCACCGGCCACGGCGCGCGCAAGCAGGGTCTTAC 1001 Query 11858 CCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTCCAAAGT 11917 |||| || || | ||| | |||| | ||||| ||||| ||||| || || | | Sbjct 1000 CCGTTCCTGGAGGACCTTCCAGAATCACACCACGCGGGATTTTGGCGCCGATTTCGGTGA 941 Query 11918 AGCGCTCAGGCTTCTTGAGGAA 11939 | ||||| | || ||| || || Sbjct 940 ACCGCTCCGCCTCCTTCAGAAA 919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588953810329200