Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq1059 183 4e-41 seq216 122 1e-22 seq181 89.7 6e-13 >seq1059 Length=17963 Score = 183 bits (202), Expect = 4e-41 Identities = 560/860 (65%), Gaps = 13/860 (2%) Strand=Plus/Plus Query 106460 AGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATT 106519 || || || || ||||| ||||| || ||| ||| || |||||||||| | ||| Sbjct 15848 AGCGCAATGGACGCCAAGTTGCACACGGCCACCTCGTCAGGTGCTGTGTACTCAATGATT 15907 Query 106520 TCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTG 106579 ||||| ||||| ||| || || || || | |||| ||||| |||| |||| Sbjct 15908 TCTGTGCACAAATTGCTGCTGCGGATTGTGCCGAGGTTCTGCTGGTTCGACTTTGAGTTG 15967 Query 106580 CACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCC 106639 ||||||||||| |||||||| || || || ||||| |||| || | || | || Sbjct 15968 GCGGCATCCTTGTACAGCATGTACGGTGTGCCGGTCTCAATCTGCGAGTCAAGCACCGCA 16027 Query 106640 TTCCACACATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTG 106699 ||||| | | || || | | || || || || || |||||||| ||| Sbjct 16028 AACCACAGTTTGCGCGCCGGAATCGTCTCGCGCGCGCGGCCTTCGTTTTCGTACTTGGTG 16087 Query 106700 TAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAG 106759 || || || || || ||| |||| || |||| | || || || || | || || ||| Sbjct 16088 TACAGCGCCTCGAAGTCCGGACCCCACGTGTCGCACAGTCCCGGCGCTTCGTTGGGGCAG 16147 Query 106760 AAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGG 106819 || || ||| || || ||||||| || ||||||||||| ||||| || ||||||| Sbjct 16148 AAGAGGCTCCACTGTCCGTCCTCCTCCACTCGCTTCATGAACAGGTCCGGCGTCCACAGC 16207 Query 106820 GATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGG 106879 | |||||||||| | || | |||||| | || ||||| || | || ||| Sbjct 16208 GCGTAAAAGAGATCACGCGCACGTGACTCTTCCTTGCCGTGGTTCTTGCGCAGGTCGAGG 16267 Query 106880 AACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG---A 106936 ||||| | || || |||||||| ||||||| ||| || | | || || || | Sbjct 16268 AACTCAAAAATGTCGGCGTGCCACGGCTCAATGTAGCAGGCAAACGCACCTTTGCGCTTA 16327 Query 106937 CGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATA 106996 | || | |||| || || ||||||||| | || | || || |||||||| | ||| Sbjct 16328 CCACCGCCCTGATCCACGTAACGCGCTGTGTCATTGTACACTCGCAGCATTGGTACAATG 16387 Query 106997 CCATCTGATTGACCATTTGTCCCCCGAATACGAGAT-TTATTGGCTCTCACATCATGGAT 107055 || | ||| |||||||| |||||||| || | || |||| | | | || Sbjct 16388 CCGTTTGACGAGCCATTTGTGCCCCGAAT-GTAGCTCTTGGTGGCACGGATGTTCGAAAT 16446 Query 107056 GTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATA 107115 | | || || || || || |||| || || ||| || | | || || |||| Sbjct 16447 GGAGAGACCGATGCCGCCGGCTGACTTGGAAATCACCGCGCAGCGCTTCAGCGTATCATA 16506 Query 107116 GATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCT 107175 ||| || | ||| ||||| || || ||| | || ||||| | | |||||| | Sbjct 16507 GATGCCTTCGATCGAGTCTTCTTTCATGGTCAGCAGAAAGCACGAGCTGAGCTGCGGGCG 16566 Query 107176 TGGTGTACCAGCATTGAAGAGGGTTGGTG----TTGCGTGAATGAACATACCTTGGGACA 107231 || || | |||||||| | || || | |||||||| |||| | ||| |||| Sbjct 16567 CGGCGTGCTTGCATTGAACAAAGTCGGCGAGGCATGCGTGAA-GAACTT---TTGCGACA 16622 Query 107232 TCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACAC 107291 | | ||||| ||||| | || ||||| | | ||||||||| | ||||| | Sbjct 16623 ACATTTCGTACGTCTCGAGAACGCTCGGGATGTCGTGCATGTGGATGCCTACTGCCACGC 16682 Query 107292 GCATAAACATGTATTGGGGT 107311 |||| | ||||| || ||| Sbjct 16683 GCATCAGCATGTGCTGCGGT 16702 Score = 109 bits (120), Expect = 6e-19 Identities = 385/588 (65%), Gaps = 19/588 (3%) Strand=Plus/Plus Query 105596 TAGTACATCCCGGTCTTGAGTCCTTGTTTCCACGCGTACATATGCATAGAAGAGAGCTTG 105655 || ||||| ||||||||||| || ||||||| |||| | ||||| || || |||||| Sbjct 14951 TAATACATACCGGTCTTGAGGCCCAGTTTCCATCCGTAAAAGTGCATGGAGGACAGCTTG 15010 Query 105656 GACATCGTTGGACTTT-CCATGAAAAGATTCATACTTTGACTCTGGTCAATGAA-GCGAC 105713 | |||||| |||| | ||||| || || ||||| ||||| ||| | Sbjct 15011 C-CTGCGTTGGGGGCAGCCATATGCACATTCAAGCTCATGCTTTGGTCGATGAACGCG-C 15068 Query 105714 CACGTTGTGCCGCCATAT-CAATGACATCCTTCATCTTGATTTCCCACACTGTGCGGTAG 105772 |||| | |||||||| | ||| | || ||| | |||||||| || || ||| Sbjct 15069 CACGGTCGGCCGCCATCTTCAACAATGTC-TTCTGCGAAATTTCCCAAACGGTTTTGTAA 15127 Query 105773 AGATTCTTG-ATATCATCTGGGATATCTGAGATATTTTGAATTGAACCCCCC---GCCTT 105828 || ||| | | ||| | || || || | | |||| | |||||| || | Sbjct 15128 AG-TTCACGCAGCTCAGCCGGAATCTCCGTCAGGCTTTGTACTGAACCATTGTTTGCGAT 15186 Query 105829 GACCATGAGATCCTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACGAG 105888 || | || | |||| | | ||| |||||| |||| ||| |||||| | | | Sbjct 15187 GATCTTG---TTCTTCGTCGCATTGTTCCAAAGGCCAAGACTCTGCAGATCACTCAGCAA 15243 Query 105889 ATGCTTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGT 105948 ||||||||| |||| | ||||| |||||||| | | | |||||||| | ||| Sbjct 15244 ATGCTTGTTAACAACGGCGAACTCGCCCGCGAGAACGCGGCGCGTGTAGATGTTTGACGT 15303 Query 105949 GTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGG 106008 ||| ||||||||||| || || ||||||| || || | ||||| || || ||||| || Sbjct 15304 GTACGGTTCAAAGCACTCGTTGTTACCCAGAATCTGCGACGTGGAAGCAGTCGGCATGGG 15363 Query 106009 TGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACATCCCA 106068 || | ||| || ||| || | || | || ||| || |||||| | |||| Sbjct 15364 CGCTACCAAGAGCGAGTTGCGCAAGCCGTGCTCAAGGATTTTTTGCTTGAGCGCTGCCCA 15423 Query 106069 GTCGTA----GTTGAGCTTGGTTTCACCTTCCCACATATCAAATTGAAGCACCCCTTGGG 106124 ||||| || || ||| | |||||| |||||| ||||| |||| | Sbjct 15424 ATCGTATCGCCCGGACGCCGGCGTCA-CGCCCCACAAATCAAACTGAAGTTTGCCTTCTG 15482 Query 106125 ACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCA 106172 | | |||||| || ||||||| ||||| ||||| || ||| |||| Sbjct 15483 ATGCGGGAGAGCCAGCAAATGTTTCATACGAACCGTGCTCTTGCGCCA 15530 >seq216 Length=49752 Score = 122 bits (134), Expect = 1e-22 Identities = 317/474 (67%), Gaps = 17/474 (4%) Strand=Plus/Minus Query 9192 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9251 |||||||| |||||||| || || | |||| || || | ||| ||| ||||| || Sbjct 1355 CGATCAAATCGACCTGGGCGCAGCAACGCGCGGTCCAGCACATCGGAGCGGTTCGTTGCC 1296 Query 9252 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9311 |||||||| | || || | | ||||| || |||||||| | | ||| || Sbjct 1295 GCGATGACGATGATTCCGCTGTTCGCCTCAAACCCGTCCATCTCCACGAGCATTTGATTC 1236 Query 9312 ATAGTTTGTTCCCGTTCATCATT--CGCTGGC-ATACCACCAGCACTGCGTTGCTTTCCC 9368 | ||||| || ||||| ||||| | | ||| ||||| || | ||| || ||| Sbjct 1235 AGCGTTTGCTCACGTTCGTCATTTCCACCGGCGATACCG---GCTCCGCGCTGGCGTCCG 1179 Query 9369 ACGGCATCAATCTCATCAATGAAGACAATACATGGTT-GATTTTC---GCGGGCGATTTC 9424 || || || || || |||||||| | || || ||| | ||||| ||| ||| Sbjct 1178 ACCGCGTCGATTTCGTCAATGAAAATGATGCAAGGTGCGTTTTTCTTTGCGTTCGAG--- 1122 Query 9425 AAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGC 9484 || ||||| || || | ||||||||||| ||||||||||||||||| | | | | Sbjct 1121 -AAAAGATCACGCACACGCGAAGCGCCCACACCCACAAACATCTCCACAAACTCGGAGCC 1063 Query 9485 GGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCT 9543 | | || | || ||||||||| | ||||| || | ||| || || || || |||| Sbjct 1062 TGCA-ATCGAGAAGAAGGGGACGCCGGCCTCACCGGCCACGGCGCGCGCAAGCAGGGTCT 1004 Query 9544 TACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCCACTTCCAA 9603 ||||||| ||||| ||| | || | |||| || || || |||||||| || | Sbjct 1003 TACCCGTTCCTGGAGGACCTTCCAGAATCACACCACGCGGGATTTTGGCGCCGATTTCGG 944 Query 9604 AGTATCTCTCAGGTTGCTTGAGAAAATCCACAATCTCTTCCAATTC-ATCTTTG 9656 | | | ||| | | ||| ||||| | || | ||| | ||||| ||||||| Sbjct 943 TGAACCGCTCCGCCTCCTTCAGAAATTGGACGACCTCGGCTAATTCGATCTTTG 890 >seq181 Length=69431 Score = 89.7 bits (98), Expect = 6e-13 Identities = 195/288 (68%), Gaps = 12/288 (4%) Strand=Plus/Plus Query 9194 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9253 ||| || | |||||| | || | ||| ||| | ||||| | | ||| ||||| || Sbjct 14179 ATCGAATCTACCTGGCCTTAGTAAAGCGGAATCTAAAATATCTGCCCTATTAGTCGCTGC 14238 Query 9254 GATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAAT 9313 || |||| || ||| || | ||||| |||||||| |||||||| | ||| || | Sbjct 14239 AATAACAATAACACCAGTATTTCCCTCAAATCCATCCATTTCTGTCAACATTTGATTCAA 14298 Query 9314 AGTTTGTTCCCGTTCATCATTCGCTGGCA--TACCACCAGCACTGCGTTGCTTTCCCACG 9371 |||||| || | |||||||| | | || || ||| | || ||||| || || Sbjct 14299 AGTTTGCTCTCTCTCATCATTACC-GCCACCTAT-ACCTGTACCACGTTGGCGCCCAACA 14356 Query 9372 GCATCAATCTCATCAATGAAGACAATACATGGTTGATT----TTCGCGGGCGATTTCAAA 9427 |||||||| |||||||| || ||||| || ||| ||| || || || | ||| Sbjct 14357 GCATCAATTTCATCAATAAATACAATGCAAGGTGCATTAGCTTTTGCTTGC----TTAAA 14412 Query 9428 GAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAA 9475 | ||| || || || || || || ||||||||||| || ||||| Sbjct 14413 TAAATCACGTACTCTAGAAGCACCTACGCCAACAAACATTTCAACAAA 14460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589958572473360