Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq250 654 0.0 seq316 524 9e-144 seq181 105 8e-18 seq400 82.4 9e-11 >seq250 Length=47047 Score = 654 bits (724), Expect = 0.0 Identities = 746/999 (75%), Gaps = 2/999 (0%) Strand=Plus/Plus Query 179775 AACCGCCTCTATGTCGGTTGGTTCGGCGTTCTGATGATTCCAACTCTGTTGGCAGCAACT 179834 ||||| | ||| |||||||||| || || | |||||||| || | || |||| ||| Sbjct 1267 AACCGTTTATATATCGGTTGGTTTGGTGTATTAATGATTCCTACATTATTAACAGCTACT 1326 Query 179835 ATCTGC-TTCATCGTCGCCTTCATCGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGA 179893 |||| |||||| | || ||| | |||||||| || || || || ||||| |||||||| Sbjct 1327 -TCTGTATTCATCATTGCATTCGTTGCTGCTCCTCCAGTTGATATTGATGGTATCCGTGA 1385 Query 179894 ACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCTTC 179953 ||| || |||||||| | | || ||||||||||| ||||||||||| ||| |||| Sbjct 1386 ACCAGTTGCTGGTTCTTTACTATACGGTAACAACATTATCTCTGGTGCTGTTATTCCAAG 1445 Query 179954 TTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCGCTTGACGAGTG 180013 ||| || |||||| |||||||||| || || |||||||| || || | |||||||| Sbjct 1446 TTCTGCTGCTATTGGTATTCACTTCTACCCAATTTGGGAAGCTGCTTCTTTAGACGAGTG 1505 Query 180014 GCTGTATAACGGTGGTCCTTTCCAACTTGTCGTCTTCCACTTCCTGATTGGCATCTATGC 180073 | | || |||||||| | || || |||| || ||||| | | || | | Sbjct 1506 GTTATACAACGGTGGGTGCTACCCTCTAATCGTATTACACTTTTTACTAGGTGTTGCTTG 1565 Query 180074 CTACATGGGTCGTGAGTGGGAACTTTCTTATCGCTTGGGTATGCGCCCCTGGATCTGCGT 180133 ||||||||||||||||||||||||| || || || |||||||| || |||||| || Sbjct 1566 CTACATGGGTCGTGAGTGGGAACTTAGCTACCGTTTAGGTATGCGTCCTTGGATCGCTGT 1625 Query 180134 AGCATATTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCA 180193 |||| ||||||||||| || || ||| ||||||||||| | |||| || | ||||| Sbjct 1626 TGCATTCTCTGCTCCAGTTGCAGCTGCAACTGCTGTATTCTTGATCTACCCGATTGGTCA 1685 Query 180194 AGGTTCATTCTCTGACGCAATGCCCCTCGGCATTTCTGGCACCTTCAACTACATGCTTGT 180253 ||| |||||||| | ||||| | || |||||||| || ||||||| |||| |||| Sbjct 1686 AGGCAGCTTCTCTGATGGTATGCCTTTAGGTATTTCTGGTACATTCAACTTCATGATTGT 1745 Query 180254 TTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGAGTAGCAGGTGT 180313 |||||||| ||||| ||||| || |||||||| |||||| | || || || ||||| Sbjct 1746 ATTCCAAGCTGAGCATAACATTCTAATGCACCCATTCCACCAATTAGGTGTTGCTGGTGT 1805 Query 180314 CTTCGGCGGTTCACTGTTCTCCGCAATGCACGGTTCACTGGTTACCTCTTCACTGGTTCG 180373 || || || || || ||| || |||||||||||||| || || ||| | | || Sbjct 1806 ATTTGGTGGATCTCTATTCAGTGCTATGCACGGTTCACTAGTAACTTCTAGTTTAATCCG 1865 Query 180374 TGAAACCACTGAAACTGAGTCCCAGAACTACGGTTACAAGTTTGGTCAAGAAGAAGAGAC 180433 |||||| ||||||| ||| || ||||| ||||||||||| |||||||||||||| || Sbjct 1866 TGAAACAACTGAAAATGAATCTGCTAACTATGGTTACAAGTTCGGTCAAGAAGAAGAAAC 1925 Query 180434 CTACAACATCGTTGCTGCACATGGATACTTCGGTCGTCTGATCTTCCAGTATGCATCGTT 180493 || ||||| |||||||||||||| ||||| |||||| | || ||||| ||||| || Sbjct 1926 TTATAACATTGTTGCTGCACATGGTTACTTTGGTCGTTTAATATTCCAATATGCTAGTTT 1985 Query 180494 CAACAACTCCCGTTCACTTCACTTCTTCCTGGCAGCATGGCCTGTCGTTGGCATCTGGTT 180553 ||||||||| |||||||||||||||||| | | |||||| || || || || ||||| Sbjct 1986 CAACAACTCTCGTTCACTTCACTTCTTCTTAGGTTTATGGCCAGTTGTAGGTATTTGGTT 2045 Query 180554 CACTGCACTGGGCGTAAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTC 180613 || | | ||| || ||||| || ||| | || ||||||||||||||||| || Sbjct 2046 AACATCTATCTCTGTATCAACTATGGCGTTTAACTTAAATGGTTTCAACTTCAACCAATC 2105 Query 180614 CATCATTGATGGTCAAGGTCGTGTGCTCAACACTTGGGCAGACGTACTCAACCGCGCTGG 180673 | |||| | ||||||||||| | ||||||||||| || | | ||||| ||| Sbjct 2106 TGTAGTTGACAGCCAAGGTCGTGTAATTAACACTTGGGCTGATATCATTAACCGTGCTAA 2165 Query 180674 TCTGGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTGGCAGC 180733 | ||||||||||||||||| |||||||| ||||||||||||||| | ||| | || | Sbjct 2166 CTTAGGTATGGAAGTTATGCATGAGCGTAACGCTCACAACTTCCCATTAGACTTAGCGTC 2225 Query 180734 TGCTGAGTCCACTCCTGTTGCACTCACCGCTCCTTCTGT 180772 || ||| || ||||||||| | || ||||| |||| Sbjct 2226 TGGTGAATCTCTACCTGTTGCATTAACAGCTCCAGCTGT 2264 >seq316 Length=14323 Score = 524 bits (580), Expect = 9e-144 Identities = 733/1021 (72%), Gaps = 8/1021 (1%) Strand=Plus/Plus Query 181420 ATGGTTTGACATCCTTGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTC 181479 ||||||||| | | ||||||||| | || | ||||| ||||| || | || ||||| Sbjct 10151 ATGGTTTGATCTTATAGATGACTGGTTGAAGAGAGACCGTTTTGTTTTCATAGGTTGGTC 10210 Query 181480 TGGACTACTTCTTTTTCCCACTGCT--TATCTTGCAATTGGGGGCTGGCTCACTGGCACT 181537 ||| || | || | || |||| |||||||| | || || ||||| || || ||| Sbjct 10211 TGGTTTATTGCTACTGCCT--TGCTCATATCTTGCCTTAGGTGGATGGCTTACAGGAACT 10268 Query 181538 ACTTTTGTTACGTCGTGGTACACCCACGGATTGGCGTCTTCCTACCTTGAGGGTGCTAAT 181597 |||||||| || || ||||| || || || || || ||| ||| | || ||| ||| Sbjct 10269 ACTTTTGTAACATCTTGGTATACTCATGGTTTAGCAAGTTCATACTTAGAAGGTTGTAAC 10328 Query 181598 TTCCTTACAGCGGCTGTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTT 181657 ||| | ||||| || || ||||| || ||| | |||||| || ||| || || | ||| Sbjct 10329 TTCTTAACAGCTGCAGTTTCAACTCCAGCTAATAGTATGGGACACTCT-TTATTATTCTT 10387 Query 181658 -TGGGGTCCTGAAGCTCAGGGCGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGGGC 181716 ||||| || |||||||| ||||||||| | ||| || | || || || ||| | Sbjct 10388 GTGGGGACCAGAAGCTCAAGGCGATTTCACAAGATGGTGTCAGATAGGTGGTCTTTGGAC 10447 Query 181717 TTTTGTGGCGCTCCACGGAGCCTTCGCTCTTATCGGTTTTATGCTCA-GGCAATTTGAAC 181775 |||| | || | || || || || | || || |||||| || | | | || ||||| Sbjct 10448 TTTTATAGCTTTACATGGCGCTTTTGGACTAATAGGTTTT-TGTTTACGTCAGTTTGAGA 10506 Query 181776 TTGCTCGTCTAATCGGAATCCGACCCTACAATGCGATTGCTTTTTCCGGTCCTATTGCTG 181835 |||| | || | || | |||| || || || ||||||||||| || ||||| ||| Sbjct 10507 TTGCAAGACTTGTGGGTTTGAGACCTTATAACGCTATTGCTTTTTCAGGACCTATATCTG 10566 Query 181836 TATTCGTCTCTGTATTTCTCATCTATCCTCTGGGACAATCCAGTTGGTTCTTTGCGCCGA 181895 | ||||| || |||||| | || |||||| | || ||| | |||||||| ||||| || | Sbjct 10567 TGTTCGTATCAGTATTTTTAATGTATCCTTTAGGCCAAGCTAGTTGGTTTTTTGCTCCTA 10626 Query 181896 GTTTCGGTGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGA 181955 |||| ||||| || || || || | || | | ||| | ||||| |||||||| |||| Sbjct 10627 GTTTTGGTGTTGCTGCCATCTTTAGATTTTTATTATTCTTACAGGGTTTTCATAACTGGA 10686 Query 181956 CGCTCAATCCCTTCCATATGATGGGTGTTGCTGGTATCCTGGGTGGCGCATTACTCTCTG 182015 || | ||||| ||||||||||||||||| |||||||| || ||||| || ||| | | || Sbjct 10687 CGTTAAATCCATTCCATATGATGGGTGTAGCTGGTATTCTTGGTGGTGCCTTATTATGTG 10746 Query 182016 CAATTCACGGTGTGACCGTGGAGAATACTCTGTATCAAGACGGTGACCAAGCAAATACTT 182075 | || || |||| || || || ||||| | | | |||| |||||| || | || | Sbjct 10747 CTATCCATGGTGCTACTGTTGAAAATACCTTATTTGAAGATGGTGACGCTGCGGACACAT 10806 Query 182076 TCAAAGCATTCGATTCAACTCAAGAAGAAGAAACCTATTCAATGGTTACAGCGAACCGCT 182135 | | ||| || | |||||||| |||||||| ||||||||||| ||||| ||||| | Sbjct 10807 TTAGAGCTTTTACTCCAACTCAATCTGAAGAAACATATTCAATGGTAACAGCAAACCGTT 10866 Query 182136 TCTGGTCTCAGATCTTCGGTATTGCGTTTAGCAATAAGAGGTGGTTGCATTTCTTTATGC 182195 | ||||| || || || ||| |||| ||| || || || ||| | |||||||||||| Sbjct 10867 TTTGGTCACAAATTTTTGGTGTTGCTTTTTCTAACAAAAGATGGCTACATTTCTTTATGT 10926 Query 182196 TCTTTGTTCCTGTTATGGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCA 182255 | ||||| || |||| ||| | ||||||||||| || || ||| | || | || | | Sbjct 10927 TGTTTGTACCAGTTACTGGTTTGTGGACAAGTTCAATTGGCATTGTAGGATTAGCATTAA 10986 Query 182256 ACCTTCGTGCTTATGACTTTGTATCCCAAGAAATCAGAGCATCAGAAGACCCAGAGTTCG 182315 | | | ||||||||||||||||| || ||| | ||||| |||| || || || || | Sbjct 10987 ATTTAAGAGCTTATGACTTTGTATCTCAGGAACTTAGAGCCGCAGAGGATCCTGAATTTG 11046 Query 182316 AGACGTTCTACACAAAGAACATTCTCTTGAATGAAGGTCTGCGTGCATGGTTAGCACCAG 182375 | || ||||| || || || ||||| ||||| |||||| | ||||||||| | || || Sbjct 11047 AAACATTCTATACTAAAAATATTCTATTGAACGAAGGTATTCGTGCATGGATGGCTGCAC 11106 Query 182376 TCGATCAACCACATGAGAACTTTGTGTTCCCTGAGGAAGTATTACCCAGAGGTAACGCAC 182435 ||||| || ||||| |||||| | ||||| ||||| || | || | || ||||| | Sbjct 11107 AAGATCAGCCTCATGAAAACTTTATATTCCCAGAGGAGGTTCTGCCACGTGGAAACGCCC 11166 Query 182436 T 182436 | Sbjct 11167 T 11167 >seq181 Length=69431 Score = 105 bits (116), Expect = 8e-18 Identities = 133/180 (74%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 171912 GACGCTGCAGATGAAGCGGGGGTTGATGCTCCATATTCCTGCCGTGCCGGTGCCTGTTCC 171971 ||||||||||| || ||||||||| ||| ||||| ||| | || ||||| || || Sbjct 20317 GACGCTGCAGAAGAGCAAGGGGTTGATCTTCCGTATTCTTGCAGAGCTGGTGCGTGCTCT 20376 Query 171972 AGCTGTGCTGGTAAACT-TGAGAGTGGTACGGTAGATCAGTCAGAGCAATCTTTCCTTGA 172030 | || ||||||||| | | ||| |||||| | ||||| || || ||||| || | || Sbjct 20377 ACTTGCGCTGGTAAAGTATCAGA-AGGTACGATTGATCAATCTGACCAATCATTTTTAGA 20435 Query 172031 TGATGATCAAATGGACGCAGGATTCGTTCTGACCTGTGTTGCTTATCCTACAAGCGATTG 172090 ||| ||||||| | || ||||| ||| | || || || |||||||||||| ||||| Sbjct 20436 TGACGATCAAACTGGTGCTGGATTTGTTTTAACTTGCGTAGCTTATCCTACATCAGATTG 20495 >seq400 Length=4522 Score = 82.4 bits (90), Expect = 9e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 141253 ATTCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAA 141312 |||||| |||||||||| || ||||| || ||||||| || ||||||||||||||| Sbjct 3861 ATTCCTTAGTAGCTCAGTGGTAGAGCAATCGGCTGTTAACCGATTGGTCGTAGGTTCAAG 3802 Query 141313 TCCTACCTGGGGAGT 141327 ||||||||| ||||| Sbjct 3801 TCCTACCTGAGGAGT 3787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610373803300560