Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq250 628 3e-175 seq316 489 2e-133 >seq250 Length=47047 Score = 628 bits (696), Expect = 3e-175 Identities = 735/987 (74%), Gaps = 8/987 (1%) Strand=Plus/Plus Query 169438 TATGTTGGTTGGTTTGGTGTTCTAATGATTCCATGCTTACTCACAGCAGCAGCATGT-TT 169496 ||| | |||||||||||||| |||||||||| ||| | ||||| | | ||| || Sbjct 1276 TATATCGGTTGGTTTGGTGTATTAATGATTCCTACATTATTAACAGCTACTTC-TGTATT 1334 Query 169497 CATCGTTGCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTAGC 169556 |||| |||||||| |||| || ||||| || ||||| || || ||| | |||||||| || Sbjct 1335 CATCATTGCATTCGTTGCTGCTCCTCCAGTTGATATTGATGGTATCCGTGAACCAGTTGC 1394 Query 169557 GGGTTCTTTCTTGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGC 169616 |||||||| | || ||||||||||| ||||||||||| ||| ||||| || || Sbjct 1395 TGGTTCTTTACTATACGGTAACAACATTATCTCTGGTGCTGTTATTCCAAGTTCTGCTGC 1454 Query 169617 TATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACTGTTGATGAATGGTTGTATAA 169676 ||| || | |||||||||||||| |||||||| || || | || || ||||| || || Sbjct 1455 TATTGGTATTCACTTCTACCCAATTTGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAA 1514 Query 169677 TGGTGGTCCTTATCAGTTGGTAATCTTCCACTTCCTTATTGGTATCTCAGCATACATGGG 169736 ||||| || | | | | || ||||| | | ||| | | |||||||| Sbjct 1515 CGGTGGGTGCTACCCTCTAATCGTATTACACTTTTTACTAGGTGTTGCTTGCTACATGGG 1574 Query 169737 AAGACAGTGGGAACTATCATACAGATTAGGAATGCGTCCTTGGATCTGTGTTGCATACTC 169796 | |||||||||| ||| | ||||| ||||||||||||||| |||||||| ||| Sbjct 1575 TCGTGAGTGGGAACTTAGCTACCGTTTAGGTATGCGTCCTTGGATCGCTGTTGCATTCTC 1634 Query 169797 TGCACCAGTATCTGCTGCATTCGCTGTATTCTTAGTATACCCATTTGGTCAGGGTTCATT 169856 ||| ||||| | |||||| ||||||||||| | ||||| ||||||| || || Sbjct 1635 TGCTCCAGTTGCAGCTGCAACTGCTGTATTCTTGATCTACCCGATTGGTCAAGGCAGCTT 1694 Query 169857 CTCTGATGGTATGCCACTAGGTATCTCAGGTACTTTCAACTTTATGTTCGTTTTCCAAGC 169916 ||||||||||||||| ||||||| || ||||| |||||||| ||| | || |||||||| Sbjct 1695 CTCTGATGGTATGCCTTTAGGTATTTCTGGTACATTCAACTTCATGATTGTATTCCAAGC 1754 Query 169917 AGAGCATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTCGGAGG 169976 |||||||||||||||||||| || |||||| ||| || || || | || || || Sbjct 1755 TGAGCATAACATTCTAATGCACCCATTCCACCAATTAGGTGTTGCTGGTGTATTTGGTGG 1814 Query 169977 ATCTTTATTCTCAGCAATGCATGGTTCACTTGTTACTTCATCTCTAATCAGAGAAACAAC 170036 |||| ||||| || ||||| |||||||| || ||||| | ||||| | |||||||| Sbjct 1815 ATCTCTATTCAGTGCTATGCACGGTTCACTAGTAACTTCTAGTTTAATCCGTGAAACAAC 1874 Query 170037 AGAGCAAGAGTCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAAACATACAACAT 170096 || | || || ||||||||||| |||||||| |||||||||||||| || ||||| Sbjct 1875 TGAAAATGAATCTGCTAACTATGGTTACAAGTTCGGTCAAGAAGAAGAAACTTATAACAT 1934 Query 170097 AGTAGCAGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCATTCAACAACTC 170156 || || ||||| ||||||||||||||| | || ||||| |||||| ||||||||||| Sbjct 1935 TGTTGCTGCACATGGTTACTTTGGTCGTTTAATATTCCAATATGCTAGTTTCAACAACTC 1994 Query 170157 AAGAAGTCTACACTTCTTCCTAGCAGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTAT 170216 | || ||||||||| ||| | | || |||||| || | |||||||| ||||| Sbjct 1995 TCGTTCACTTCACTTCTTCTTAGGTTTATGGCCAGTTGTAGGTATTTGGTTAACATCTAT 2054 Query 170217 GGGTATCTGCACAATGGCATTCAACTTGAATGGTTTCAACTTTAACCAATCAGTTGTTGA 170276 | | | || ||||| || ||||| |||||||||||||| |||||||| || ||||| Sbjct 2055 CTCTGTATCAACTATGGCGTTTAACTTAAATGGTTTCAACTTCAACCAATCTGTAGTTGA 2114 Query 170277 -TGCTAACG--GAAAAATCGTCCCAACATGGGGTGATGTTCTAAACAGAGCAAACTTGGG 170333 || || | | ||| | || |||| |||| | | ||| | || ||||| || Sbjct 2115 CAGCCAAGGTCGTGTAATTAAC---ACTTGGGCTGATATCATTAACCGTGCTAACTTAGG 2171 Query 170334 TATGGAAGTTATGCATGAAAGAAATGCACACAACTTCCCACTAGACCTAGCATCTGCTGA 170393 |||||||||||||||||| | || || |||||||||||| ||||| |||| |||| ||| Sbjct 2172 TATGGAAGTTATGCATGAGCGTAACGCTCACAACTTCCCATTAGACTTAGCGTCTGGTGA 2231 Query 170394 GTCTACACAGGTTGCTTTAACAGCACC 170420 ||| || ||||| |||||||| || Sbjct 2232 ATCTCTACCTGTTGCATTAACAGCTCC 2258 >seq316 Length=14323 Score = 489 bits (542), Expect = 2e-133 Identities = 738/1046 (71%), Gaps = 25/1046 (2%) Strand=Plus/Plus Query 170523 GGTTGGTTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTTGTATTCATAGGATGG 170582 || ||||||||| || | || |||||||| |||||||| |||||||| |||||||| ||| Sbjct 10149 GGATGGTTTGATCTTATAGATGACTGGTTGAAGAGAGACCGTTTTGTTTTCATAGGTTGG 10208 Query 170583 TCTGGTCTTTTACTTCTGCCTTGTGCATACCTATCAATCGGTGGTTGGTTCTTAGGGACT 170642 |||||| | || || |||||||| |||| || | | ||||| ||| | ||| ||| Sbjct 10209 TCTGGTTTATTGCTACTGCCTTGCTCATATCTTGCCTTAGGTGGATGGCTTACAGGAACT 10268 Query 170643 ACCTTCGTTACATCATGGTATACACATGGTGTTGCTTCCTCATATCTTGAGGGATGTAAC 170702 || || || ||||| |||||||| |||||| | || ||||| | || || |||||| Sbjct 10269 ACTTTTGTAACATCTTGGTATACTCATGGTTTAGCAAGTTCATACTTAGAAGGTTGTAAC 10328 Query 170703 TTCCTAACAGCAGCAGTTTCCACACCTGGCGACGCAATGGGTCATAGTCTTCTGTTCCTT 170762 ||| ||||||| |||||||| || || | | ||||| || | | | ||| | Sbjct 10329 TTCTTAACAGCTGCAGTTTCAACTCCAGCTAATAGTATGGGACACTCTTTATTATTCTTG 10388 Query 170763 TGGGGACCTGAAGCACAAGGTTCATTTGTTCGTTGGTTACAACTCGGAGGTTTATGGAAC 170822 |||||||| ||||| ||||| || | |||| || | || ||| | |||| Sbjct 10389 TGGGGACCAGAAGCTCAAGGCGATTTCACAAGATGGTGTCAGATAGGTGGTCTTTGGACT 10448 Query 170823 TTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCA-GACAATTTGAGAT 170881 ||| |||| |||||||| | |||||||| |||||||| || | | | || |||||||| Sbjct 10449 TTTATAGCTTTACATGGCGCTTTTGGACTAATAGGTTTT-TGTTTACGTCAGTTTGAGAT 10507 Query 170882 CGCAGGACTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGT 170941 ||| ||||||| || | |||||||| ||||| | || || || | ||| | || Sbjct 10508 TGCAAGACTTGTGGGTTTGAGACCTTATAACGCTATTGCTTTTTCAGGACCTATATCTGT 10567 Query 170942 CTTCACTAGCA-TCTTTCTGATCTATCCACTAGGTCAGCACAGTTGGTTCTTCGCACCAT 171000 ||| || || | ||| | || ||||| |||| || |||||||| || || || Sbjct 10568 GTTCG-TATCAGTATTTTTAATGTATCCTTTAGGCCAAGCTAGTTGGTTTTTTGCTCCTA 10626 Query 171001 CATTCGGTGTCGCAGCAATTTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTA 171060 || ||||| || || || ||| | | | | |||||| |||| ||||| || ||| | Sbjct 10627 GTTTTGGTGTTGCTGCCATCTTTAGATTTTTATTATTCTTACAGGGTTTTCATAACTGGA 10686 Query 171061 CATTGAATCCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTATTATGTG 171120 | || |||||||| || ||||||||||| || || || || ||||| || |||||||||| Sbjct 10687 CGTTAAATCCATTCCATATGATGGGTGTAGCTGGTATTCTTGGTGGTGCCTTATTATGTG 10746 Query 171121 CCATTCATGGTGCAACAGTGCAGAACACATTGTATGAAGACACATCAGTTTATACTGATA 171180 | || |||||||| || || | || || || | |||||| | | | ||| Sbjct 10747 CTATCCATGGTGCTACTGTTGAAAATACCTTATTTGAAGA------TGGTGACGCTG--- 10797 Query 171181 ATAAAATTCAAAGCACAACATTCCGTGCCTTTGATCCTACACAGGAAGAAGAAACTTACA 171240 | || ||||| | || ||| ||| || || |||||||| || Sbjct 10798 -----------CGGAC-ACATTTAGAGCTTTTACTCCAACTCAATCTGAAGAAACATATT 10845 Query 171241 GTATGATTACAGCAAACAGATTCTGGTCACAGATATTTGGTATTGCTTTCTCTAACAAAA 171300 ||| | ||||||||| | || |||||||| || |||||| ||||||| |||||||||| Sbjct 10846 CAATGGTAACAGCAAACCGTTTTTGGTCACAAATTTTTGGTGTTGCTTTTTCTAACAAAA 10905 Query 171301 GATTTTTACACTTCCTTATGTTGTTCGTTCCTGTCATGGGTATGTGGACATCATCTATAG 171360 ||| |||| ||| |||||||||| || || || | ||| |||||||| || || | Sbjct 10906 GATGGCTACATTTCTTTATGTTGTTTGTACCAGTTACTGGTTTGTGGACAAGTTCAATTG 10965 Query 171361 GTATCGTAGGTCTAGCACTTAACCTCAGAGCATACGATTTTGTATCTCAAGAGATAAGAG 171420 | || ||||| ||||| | || | ||||| || || ||||||||||| || | |||| Sbjct 10966 GCATTGTAGGATTAGCATTAAATTTAAGAGCTTATGACTTTGTATCTCAGGAACTTAGAG 11025 Query 171421 CAGCAGAAGACCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTA 171480 | ||||| || || || || || || ||||| ||||| ||||| || | || ||||||| Sbjct 11026 CCGCAGAGGATCCTGAATTTGAAACATTCTATACTAAAAATATTCTATTGAACGAAGGTA 11085 Query 171481 TGAGAGCATGGATGTCATCAGTTGACCAACCACATGAGAACTTCGTATTCCCAGAAGAAG 171540 | | ||||||||| | || || || || ||||| ||||| |||||||||| || | Sbjct 11086 TTCGTGCATGGATGGCTGCACAAGATCAGCCTCATGAAAACTTTATATTCCCAGAGGAGG 11145 Query 171541 TGTTACCAAGAGGTAACGCACTTTAA 171566 | | ||| | || ||||| |||||| Sbjct 11146 TTCTGCCACGTGGAAACGCCCTTTAA 11171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579190978157760