Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_015281.1 Length=179563 Score E Sequences producing significant alignments: (Bits) Value seq250 668 0.0 seq316 524 9e-144 >seq250 Length=47047 Score = 668 bits (740), Expect = 0.0 Identities = 770/1030 (75%), Gaps = 6/1030 (1%) Strand=Plus/Plus Query 167862 TTTCTGCGAGTGGGTAACATCAACTAACAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 167921 ||||||| ||||| ||| ||| | ||||| | ||| |||||||||| || ||| | Sbjct 1239 TTTCTGCTCTTGGGTTACAAGCACTGAAAACCGTTTATATATCGGTTGGTTTGGTGTATT 1298 Query 167922 GATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 167980 |||||||| || | || |||| ||| ||||| |||||| | || ||||| ||||||| Sbjct 1299 AATGATTCCTACATTATTAACAGCTACT-TCTGTATTCATCATTGCATTCGTTGCTGCTC 1357 Query 167981 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACA 168040 | || || || || || || ||||||||||| || |||||||| | | || ||||||| Sbjct 1358 CTCCAGTTGATATTGATGGTATCCGTGAACCAGTTGCTGGTTCTTTACTATACGGTAACA 1417 Query 168041 ACATCATCTCTGGTGCAGTTGTCCCTTCTTCTAATGCTATTGGACTTCACTTCTATCCCA 168100 |||| ||||||||||| ||| | || |||| ||||||||| |||||||||| || | Sbjct 1418 ACATTATCTCTGGTGCTGTTATTCCAAGTTCTGCTGCTATTGGTATTCACTTCTACCCAA 1477 Query 168101 TCTGGGAAGCAGCATCACTCGATGAGTGGTTGTATAACGGTGGTCCTTTCCAACTAGTAG 168160 | |||||||| || || | || |||||||| || |||||||| | || ||| | | Sbjct 1478 TTTGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGGTGCTACCCTCTAATCG 1537 Query 168161 TCTTTCACTTCCTCATCGGTAT--CTATGCATACATGGGACGTGAATGGGAACTTTCATA 168218 | || ||||| | | ||| | || ||| |||||||| ||||| ||||||||| || Sbjct 1538 TATTACACTTTTTACTAGGTGTTGCT-TGC-TACATGGGTCGTGAGTGGGAACTTAGCTA 1595 Query 168219 TCGTTTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGCAGCGAG 168278 ||||||||||||||||| |||||| |||||||| |||||| ||||| || || || | Sbjct 1596 CCGTTTAGGTATGCGTCCTTGGATCGCTGTTGCATTCTCTGCTCCAGTTGCAGCTGCAAC 1655 Query 168279 TGCAGTATTCCTAGTGTATCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGG 168338 ||| |||||| | | || || | |||||||| || |||||||||| ||||| | || Sbjct 1656 TGCTGTATTCTTGATCTACCCGATTGGTCAAGGCAGCTTCTCTGATGGTATGCCTTTAGG 1715 Query 168339 AATCTCAGGAACATTCAACTACATGTTGGTCTTCCAAGCTGAGCACAATATTCTCATGCA 168398 || || || |||||||||| |||| | || |||||||||||||| || ||||| ||||| Sbjct 1716 TATTTCTGGTACATTCAACTTCATGATTGTATTCCAAGCTGAGCATAACATTCTAATGCA 1775 Query 168399 TCCCTTCCATATGCTCGGCGTTGCTGGGGTATTTGGTGGCAGTTTGTTTAGTGCTATGCA 168458 || ||||| | || |||||||| ||||||||||| | | || ||||||||||| Sbjct 1776 CCCATTCCACCAATTAGGTGTTGCTGGTGTATTTGGTGGATCTCTATTCAGTGCTATGCA 1835 Query 168459 CGGAAGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTGAAACCGAATCCCAAAACTA 168518 ||| | || |||||| | | | | || || ||||||| ||||| ||||| Sbjct 1836 CGGTTCACTAGTAACTTCTAGTTTAATCCGTGAAACAACTGAAAATGAATCTGCTAACTA 1895 Query 168519 CGGTTACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGGTTACTT 168578 |||||||||||||| |||||||||||||| || ||||| || || || ||||||||||| Sbjct 1896 TGGTTACAAGTTCGGTCAAGAAGAAGAAACTTATAACATTGTTGCTGCACATGGTTACTT 1955 Query 168579 CGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGCACTTCTTCCT 168638 |||||||| || |||||||| ||| ||||||||||| || || | ||||||||| | Sbjct 1956 TGGTCGTTTAATATTCCAATATGCTAGTTTCAACAACTCTCGTTCACTTCACTTCTTCTT 2015 Query 168639 TGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATT 168698 | | |||||| ||||| || || ||||| || | | || || || ||||| || Sbjct 2016 AGGTTTATGGCCAGTTGTAGGTATTTGGTTAACATCTATCTCTGTATCAACTATGGCGTT 2075 Query 168699 CAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAA 168758 ||| | || ||||||||||||||||| || | |||| | || |||||||| | || Sbjct 2076 TAACTTAAATGGTTTCAACTTCAACCAATCTGTAGTTGACAGCCAAGGTCGTGTAATTAA 2135 Query 168759 CACCTGGGCAGATGTTCTGAACCGCGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAA 168818 ||| ||||| ||| | | ||||| ||| | |||||||||||||||||||||||||| Sbjct 2136 CACTTGGGCTGATATCATTAACCGTGCTAACTTAGGTATGGAAGTTATGCATGAGCGTAA 2195 Query 168819 CGCACACAACTTCCCACTCGATCTTGCTGCTGCTGAGTCCACACCTGTGGCCTTGATTGC 168878 ||| |||||||||||| | || | || ||| ||| || |||||| || || | || Sbjct 2196 CGCTCACAACTTCCCATTAGACTTAGCGTCTGGTGAATCTCTACCTGTTGCATTAACAGC 2255 Query 168879 TCCTTCTGTT 168888 ||| ||||| Sbjct 2256 TCCAGCTGTT 2265 >seq316 Length=14323 Score = 524 bits (580), Expect = 9e-144 Identities = 732/1022 (72%), Gaps = 6/1022 (1%) Strand=Plus/Plus Query 169301 GGGTGGTTCGATGTTCTCGATGACTGGCTCAAACGCGACCGCTTTGTATTCATTGGTTGG 169360 || ||||| ||| || | ||||||||| | || | ||||| ||||| ||||| |||||| Sbjct 10149 GGATGGTTTGATCTTATAGATGACTGGTTGAAGAGAGACCGTTTTGTTTTCATAGGTTGG 10208 Query 169361 TCTGGTCTACTTCTTCTTCCCACTGCCTATCTTGCTATTGGAGGGTGGCTCACTGGTACA 169420 |||||| || | || || || | |||||||| | || || ||||| || || || Sbjct 10209 TCTGGTTTATTGCTACTGCCTTGCTCATATCTTGCCTTAGGTGGATGGCTTACAGGAACT 10268 Query 169421 GCGTTTGTTACTTCCTGGTACACCCACGGACTCGCT--TCCAGTTACTTAGAAGGCGCTA 169478 | ||||| || || ||||| || || || | || | || ||||||||||| || Sbjct 10269 ACTTTTGTAACATCTTGGTATACTCATGGTTTAGCAAGTTCA--TACTTAGAAGGTTGTA 10326 Query 169479 ACTTCCTCACTGCTGCTGTCAGTACACCTGCTGACGCTATGGGACACTCACTGCTCTTGC 169538 ||||| | || ||||| || || || ||| | |||||||||||| | | || Sbjct 10327 ACTTCTTAACAGCTGCAGTTTCAACTCCAGCTAATAGTATGGGACACTCTTTATTATTCT 10386 Query 169539 TATGGGGTCCAGAAGCACAAGGCGATTTCGTTCGCTGGTGTCAATTGGGTGGTCTCTGGA 169598 | ||||| |||||||| |||||||||||| | |||||||| | |||||||| |||| Sbjct 10387 TGTGGGGACCAGAAGCTCAAGGCGATTTCACAAGATGGTGTCAGATAGGTGGTCTTTGGA 10446 Query 169599 ACTTTGTAGCACTTCATGGTGCATTTGCATTGATTGGTTTCATGCTTAGG-CAGTTTGAA 169657 ||| |||| | ||||| || |||| | | || ||||| || ||| | |||||||| Sbjct 10447 CTTTTATAGCTTTACATGGCGCTTTTGGACTAATAGGTTTT-TGTTTACGTCAGTTTGAG 10505 Query 169658 TTGGCACGTCTTATTGGCATCCGTCCTTATAATGCTATTGCATTCTCTGGTCCTATTGCT 169717 | ||| | ||| | || | | |||||||| |||||||| || || || ||||| || Sbjct 10506 ATTGCAAGACTTGTGGGTTTGAGACCTTATAACGCTATTGCTTTTTCAGGACCTATATCT 10565 Query 169718 GTATTTGTCAGTGTCTTTCTTATCTACCCACTTGGACAGTCCTCATGGTTCTTTGCTCCC 169777 || || || || ||| | || || || | || || | ||||| |||||||| Sbjct 10566 GTGTTCGTATCAGTATTTTTAATGTATCCTTTAGGCCAAGCTAGTTGGTTTTTTGCTCCT 10625 Query 169778 TCCTTTGGAGTATCAGCAATCTTCAGGTTCCTGTTGTTCCTGCAAGGATTCCACAACTGG 169837 ||||| || | || ||||| || || | || ||| | || || || || |||||| Sbjct 10626 AGTTTTGGTGTTGCTGCCATCTTTAGATTTTTATTATTCTTACAGGGTTTTCATAACTGG 10685 Query 169838 ACGTTGAATCCATTCCACATGATGGGTGTAGCAGGAATCTTGGGCGGAGCATTGCTTTCT 169897 ||||| ||||||||||| |||||||||||||| || || | || || || || | | | Sbjct 10686 ACGTTAAATCCATTCCATATGATGGGTGTAGCTGGTATTCTTGGTGGTGCCTTATTATGT 10745 Query 169898 GCTATCCATGGTGTTACAGTAGAGAACACATTGTATGAAGACGGTGAGCAGGCAAATACT 169957 ||||||||||||| ||| || || || || || | |||||| ||||| || | || Sbjct 10746 GCTATCCATGGTGCTACTGTTGAAAATACCTTATTTGAAGATGGTGACGCTGCGGACACA 10805 Query 169958 TTCAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGC 170017 || | || ||| | | || || ||||| || ||||| ||||| || |||||||| Sbjct 10806 TTTAGAGCTTTTACTCCAACTCAATCTGAAGAAACATATTCAATGGTAACAGCAAACCGT 10865 Query 170018 TTCTGGTCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGTTGGCTTCATTTTTTCATG 170077 || ||||| || || || ||| |||| ||||||||||| | ||||| ||||| || ||| Sbjct 10866 TTTTGGTCACAAATTTTTGGTGTTGCTTTTTCTAACAAAAGATGGCTACATTTCTTTATG 10925 Query 170078 TTGTTTGTGCCTGTTATGGGTCTTTGGACATCCTCTATTGGCATTATTGGCCTTGCTCTC 170137 |||||||| || |||| ||| | |||||| || ||||||||| | || | || | Sbjct 10926 TTGTTTGTACCAGTTACTGGTTTGTGGACAAGTTCAATTGGCATTGTAGGATTAGCATTA 10985 Query 170138 AATCTTCGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCAGAATTT 170197 ||| | | ||||| || || || |||||| | ||||| ||||| ||||| |||||| Sbjct 10986 AATTTAAGAGCTTATGACTTTGTATCTCAGGAACTTAGAGCCGCAGAGGATCCTGAATTT 11045 Query 170198 GAGACCTTCTACACCAAAAACATCCTATTGAATGAAGGACTTCGTGCATGGTTGGCACCT 170257 || || ||||| || ||||| || |||||||| ||||| ||||||||||| |||| | Sbjct 11046 GAAACATTCTATACTAAAAATATTCTATTGAACGAAGGTATTCGTGCATGGATGGCTGCA 11105 Query 170258 GCTGATCAACCACATGAAAACTTCATCTTCCCAGAAGAAGTTCTTCCGAGAGGTAACGCA 170317 ||||| || ||||||||||| || |||||||| || ||||| || | || ||||| Sbjct 11106 CAAGATCAGCCTCATGAAAACTTTATATTCCCAGAGGAGGTTCTGCCACGTGGAAACGCC 11165 Query 170318 CT 170319 || Sbjct 11166 CT 11167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 574451956707120