Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_015282.1 Length=174079 Score E Sequences producing significant alignments: (Bits) Value seq250 673 0.0 seq316 571 6e-158 >seq250 Length=47047 Score = 673 bits (746), Expect = 0.0 Identities = 743/983 (76%), Gaps = 6/983 (1%) Strand=Plus/Plus Query 163776 TGGGAATCATTCTGCGAATGGGTGACTTCCACAAACAACCGCCTCTATGTTGGTTGGTTC 163835 |||||| |||||| ||||| || ||| | ||||| | ||| | |||||||| Sbjct 1231 TGGGAACGTTTCTGCTCTTGGGTTACAAGCACTGAAAACCGTTTATATATCGGTTGGTTT 1290 Query 163836 GGCGTTCTGATGATCCCTACGCTGCTTGCAGCAACCATCTGT-TTCATCGTCGCCTTCGT 163894 || || | ||||| ||||| | | |||| || ||||| |||||| | || ||||| Sbjct 1291 GGTGTATTAATGATTCCTACATTATTAACAGCTACT-TCTGTATTCATCATTGCATTCGT 1349 Query 163895 CGCTGCTCCCCCTGTGGACATCGATGGTATTCGTGAACCTGTTGCAGGTTCGCTCATGTA 163954 |||||||| || || || || |||||||| |||||||| ||||| ||||| | | || Sbjct 1350 TGCTGCTCCTCCAGTTGATATTGATGGTATCCGTGAACCAGTTGCTGGTTCTTTACTATA 1409 Query 163955 TGGTAACAACATCATCTCTGGTGCAGTTGTTCCCTCGTCCAATGCAATTGGTCTTCACTT 164014 ||||||||||| ||||||||||| ||| |||| || ||| |||||| ||||||| Sbjct 1410 CGGTAACAACATTATCTCTGGTGCTGTTATTCCAAGTTCTGCTGCTATTGGTATTCACTT 1469 Query 164015 CTACCCCATTTGGGAAGCCGCATCCCTTGATGAATGGCTTTACAACGGTGGTCCTTTCCA 164074 |||||| ||||||||||| || || | || || ||| | ||||||||||| | || Sbjct 1470 CTACCCAATTTGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGGTGCTACCC 1529 Query 164075 ACTTGTCGTCTTCCACTTCCTGATCGGTAT--CTATGCATACATGGGTCGTGAGTGGGAA 164132 || |||| || ||||| | | ||| | || ||| ||||||||||||||||||||| Sbjct 1530 TCTAATCGTATTACACTTTTTACTAGGTGTTGCT-TGC-TACATGGGTCGTGAGTGGGAA 1587 Query 164133 CTGTCTTACCGTCTTGGTATGCGTCCTTGGATTTGTGTTGCTTACTCTGCACCCGTTGCA 164192 || |||||| | ||||||||||||||||| |||||| | |||||| || |||||| Sbjct 1588 CTTAGCTACCGTTTAGGTATGCGTCCTTGGATCGCTGTTGCATTCTCTGCTCCAGTTGCA 1647 Query 164193 GCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCGTTCTCTGACGCAATG 164252 || ||| | || || ||| || |||| || | |||||||| |||||||| | ||| Sbjct 1648 GCTGCAACTGCTGTATTCTTGATCTACCCGATTGGTCAAGGCAGCTTCTCTGATGGTATG 1707 Query 164253 CCCCTGGGCATCTCTGGCACCTTCAACTACATGTTGGTGTTCCAAGCAGAGCACAACATC 164312 || | || || ||||| || ||||||| |||| | || |||||||| ||||| ||||| Sbjct 1708 CCTTTAGGTATTTCTGGTACATTCAACTTCATGATTGTATTCCAAGCTGAGCATAACATT 1767 Query 164313 CTGATGCACCCCTTCCATATGCTCGGCGTTGCTGGCGTATTTGGCGGTTCTCTGTTCAGT 164372 || |||||||| ||||| | || |||||||| |||||||| || ||||| |||||| Sbjct 1768 CTAATGCACCCATTCCACCAATTAGGTGTTGCTGGTGTATTTGGTGGATCTCTATTCAGT 1827 Query 164373 GCAATGCACGGTTCTCTGGTTACTTCTTCGCTGGTTCGTGAAACCACCGAAACTGAGTCC 164432 || ||||||||||| || || |||||| | | |||||||| || |||| ||| || Sbjct 1828 GCTATGCACGGTTCACTAGTAACTTCTAGTTTAATCCGTGAAACAACTGAAAATGAATCT 1887 Query 164433 CAGAACTATGGTTACAAGTTTGGTCAAGAAGAAGAAACATACAACATTGTTGCCGCTCAC 164492 ||||||||||||||||| ||||||||||||||||| || ||||||||||| || || Sbjct 1888 GCTAACTATGGTTACAAGTTCGGTCAAGAAGAAGAAACTTATAACATTGTTGCTGCACAT 1947 Query 164493 GGTTACTTTGGTCGTCTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCAC 164552 ||||||||||||||| | || |||||||| ||| ||||||||||| ||||| | ||| Sbjct 1948 GGTTACTTTGGTCGTTTAATATTCCAATATGCTAGTTTCAACAACTCTCGTTCACTTCAC 2007 Query 164553 TTCTTCCTTGCTGCATGGCCTGTTGTTGGCATCTGGTTCACCGCACTTGGTGTTTCCACG 164612 |||||| | | | |||||| ||||| || || ||||| || | | ||| || || Sbjct 2008 TTCTTCTTAGGTTTATGGCCAGTTGTAGGTATTTGGTTAACATCTATCTCTGTATCAACT 2067 Query 164613 ATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGT 164672 ||||| || ||| | || ||||||||||||||||| || | | || | || |||||| Sbjct 2068 ATGGCGTTTAACTTAAATGGTTTCAACTTCAACCAATCTGTAGTTGACAGCCAAGGTCGT 2127 Query 164673 GTGCTCAACACTTGGGCAGACGTTCTCAACCGCGCTGGTCTGGGTATGGAAGTTATGCAC 164732 || | ||||||||||| || | | ||||| ||| | ||||||||||||||||| Sbjct 2128 GTAATTAACACTTGGGCTGATATCATTAACCGTGCTAACTTAGGTATGGAAGTTATGCAT 2187 Query 164733 GAGCGTAACGCTCACAACTTCCC 164755 ||||||||||||||||||||||| Sbjct 2188 GAGCGTAACGCTCACAACTTCCC 2210 >seq316 Length=14323 Score = 571 bits (632), Expect = 6e-158 Identities = 747/1024 (73%), Gaps = 10/1024 (1%) Strand=Plus/Plus Query 165188 GGGTGGTTCGATGTCCTCGATGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGTTGG 165247 || ||||| ||| | | ||||||||| | || |||| ||||| ||||| | |||||| Sbjct 10149 GGATGGTTTGATCTTATAGATGACTGGTTGAAGAGAGACCGTTTTGTTTTCATAGGTTGG 10208 Query 165248 TCTGGACTTCTTCTTTTTCCCACTGCT--TATCTTGCTATTGGCGGTTGGCTTACTGGGA 165305 ||||| | | || | || |||| |||||||| | || || |||||||| || | Sbjct 10209 TCTGGTTTATTGCTACTGCCT--TGCTCATATCTTGCCTTAGGTGGATGGCTTACAGGAA 10266 Query 165306 CTACTTTCGCGACGAGTTGGTATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGTGCAA 165365 ||||||| | || |||||||||||| || || |||||||| || | || ||| | Sbjct 10267 CTACTTTTGTAACATCTTGGTATACTCATGGTTTAGCAAGTTCATACTTAGAAGGTTGTA 10326 Query 165366 ACTTTCTTACTGCGGCAGTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTC 165425 |||| | || || |||||||| |||||||| | |||||| || ||| || | ||| Sbjct 10327 ACTTCTTAACAGCTGCAGTTTCAACTCCAGCTAATAGTATGGGACACTCT-TTATTATTC 10385 Query 165426 -TCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGG 165484 | ||||| || || |||||||| |||||| || ||| || | || || || ||| Sbjct 10386 TTGTGGGGACCAGAAGCTCAAGGCGATTTCACAAGATGGTGTCAGATAGGTGGTCTTTGG 10445 Query 165485 GCTTTTGTGGCGCTCCACGGGGCTTTCGCTCTAATTGGTTTCATGCTT-CGTCAGTTTGA 165543 ||||| | || | || || ||||| | ||||| ||||| || || ||||||||||| Sbjct 10446 ACTTTTATAGCTTTACATGGCGCTTTTGGACTAATAGGTTT-TTGTTTACGTCAGTTTGA 10504 Query 165544 ATTAGCACGTCTCATCGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGC 165603 | ||| | || | ||| | | || || || |||||||| || || || ||||| | Sbjct 10505 GATTGCAAGACTTGTGGGTTTGAGACCTTATAACGCTATTGCTTTTTCAGGACCTATATC 10564 Query 165604 TGTTTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCC 165663 ||| || || || ||| | || || ||| | || ||| | ||||||||||| ||||| Sbjct 10565 TGTGTTCGTATCAGTATTTTTAATGTATCCTTTAGGCCAAGCTAGTTGGTTTTTTGCTCC 10624 Query 165664 ATCTTTCGGGGTCGCAGCAATCTTCAGGTTCCTTCTCTTCCTACAAGGATTCCATAACTG 165723 ||| || || || || ||||| || || | | ||| |||| || || |||||||| Sbjct 10625 TAGTTTTGGTGTTGCTGCCATCTTTAGATTTTTATTATTCTTACAGGGTTTTCATAACTG 10684 Query 165724 GACCTTGAATCCCTTTCATATGATGGGTGTTGCAGGTATCCTGGGTGGTGCATTGCTTTC 165783 ||| || ||||| || |||||||||||||| || ||||| || |||||||| || | | Sbjct 10685 GACGTTAAATCCATTCCATATGATGGGTGTAGCTGGTATTCTTGGTGGTGCCTTATTATG 10744 Query 165784 TGCCATCCATGGTGTTACAGTAGAGAATACTCTGTATCAAGATGGTGACGATGCAAATAC 165843 ||| |||||||||| ||| || || ||||| | | | |||||||||||| ||| | || Sbjct 10745 TGCTATCCATGGTGCTACTGTTGAAAATACCTTATTTGAAGATGGTGACGCTGCGGACAC 10804 Query 165844 TTTCAAGGCATTTGACT-CTACTCAAGAGGAAGAAACCTACTCAATGGTTACTGCAAACC 165902 || | || ||| ||| | |||||| |||||||| || |||||||| || ||||||| Sbjct 10805 ATTTAGAGC-TTTTACTCCAACTCAATCTGAAGAAACATATTCAATGGTAACAGCAAACC 10863 Query 165903 GTTTCTGGTCTCAGATCTTCGGTATTGCGTTTAGTAATAAGAGGTGGTTGCATTTCTTTA 165962 |||| ||||| || || || ||| |||| ||| ||| || || ||| | |||||||||| Sbjct 10864 GTTTTTGGTCACAAATTTTTGGTGTTGCTTTTTCTAACAAAAGATGGCTACATTTCTTTA 10923 Query 165963 TGCTGTTTGTTCCTGTTATGGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTC 166022 || ||||||| || |||| ||| | ||||||||||| || || ||| | || | || Sbjct 10924 TGTTGTTTGTACCAGTTACTGGTTTGTGGACAAGTTCAATTGGCATTGTAGGATTAGCAT 10983 Query 166023 TCAACCTTCGTGCTTATGACTTTGTATCCCAAGAGATCAGAGCAGCAGAAGACCCAGAGT 166082 | || | | ||||||||||||||||| || || | ||||| ||||| || || || | Sbjct 10984 TAAATTTAAGAGCTTATGACTTTGTATCTCAGGAACTTAGAGCCGCAGAGGATCCTGAAT 11043 Query 166083 TTGAAACCTTCTACACGAAAAACATTCTCTTGAATGAAGGTCTTCGTGCTTGGTTGGCAC 166142 ||||||| ||||| || ||||| ||||| ||||| |||||| ||||||| ||| |||| Sbjct 11044 TTGAAACATTCTATACTAAAAATATTCTATTGAACGAAGGTATTCGTGCATGGATGGCTG 11103 Query 166143 CAGTCGATCAACCGCATGAGAACTTTGTCTTCCCTGAAGAAGTTCTGCCTAGGGGTAACG 166202 || ||||| || ||||| |||||| | ||||| || || |||||||| | || |||| Sbjct 11104 CACAAGATCAGCCTCATGAAAACTTTATATTCCCAGAGGAGGTTCTGCCACGTGGAAACG 11163 Query 166203 CGCT 166206 | || Sbjct 11164 CCCT 11167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556903817858160